Basic Information

Insect: Heliconius nattereri
Gene Symbol: -
Assembly: GCA_013403645.1
Location: JAAIXI010000234.1:3480815-3488086[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00049 0.033 14.7 0.4 1 23 259 281 259 281 0.98

2 12 0.011 0.74 10.5 1.2 1 23 288 310 288 310 0.96

3 12 7.8 5.4e+02 1.5 1.1 1 23 314 336 314 336 0.93

4 12 0.002 0.13 12.8 0.1 1 22 341 362 341 362 0.93

5 12 0.0071 0.49 11.1 0.5 3 23 381 402 380 402 0.96

6 12 9.9 6.8e+02 1.2 2.0 2 22 418 438 418 442 0.91

7 12 1.4 96 3.8 0.1 2 23 450 470 449 470 0.94

8 12 0.00015 0.01 16.3 2.9 3 23 493 514 492 514 0.97

9 12 1.6e-05 0.0011 19.4 1.6 3 23 525 545 523 545 0.97

10 12 0.00044 0.03 14.9 0.1 1 23 551 573 551 573 0.97

11 12 8.3e-05 0.0056 17.2 0.1 1 23 579 601 579 601 0.96

12 12 3.4e-05 0.0023 18.4 2.7 3 23 609 630 607 630 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00049	0.033	14.7	0.4	1	23	259	281	259	281	0.98
2	12	0.011	0.74	10.5	1.2	1	23	288	310	288	310	0.96
3	12	7.8	5.4e+02	1.5	1.1	1	23	314	336	314	336	0.93
4	12	0.002	0.13	12.8	0.1	1	22	341	362	341	362	0.93
5	12	0.0071	0.49	11.1	0.5	3	23	381	402	380	402	0.96
6	12	9.9	6.8e+02	1.2	2.0	2	22	418	438	418	442	0.91
7	12	1.4	96	3.8	0.1	2	23	450	470	449	470	0.94
8	12	0.00015	0.01	16.3	2.9	3	23	493	514	492	514	0.97
9	12	1.6e-05	0.0011	19.4	1.6	3	23	525	545	523	545	0.97
10	12	0.00044	0.03	14.9	0.1	1	23	551	573	551	573	0.97
11	12	8.3e-05	0.0056	17.2	0.1	1	23	579	601	579	601	0.96
12	12	3.4e-05	0.0023	18.4	2.7	3	23	609	630	607	630	0.95

Sequence Information

Coding Sequence: atgaacgcgaatgttaataattataaattgaatgttTGTAGAATATGTTTAAGTAGTAAAGATTtacctttattttgtttatccaATACTCCATTGAAAGCtatttttgagaaattaaCGGATATTGATCTAAACTACACAGATATTAGTAAAATCTGCTATATTTGTTTTGCAAGActcaaaaaatgttatattttatgccAAGAAGCCATTATTGCtgataaattgttaaaagaaGCTGTGCACTGTAATGTAAAaccAAATCAACTATGGAATTTCAATAAACTATCAAAATCAtccacaattaatataaaatttgatccAATGGACTGTAACAATAAAGGACTtgctaaatttaaaacagaGGAGAATGAAGACATTTTACATGATATTCAACATATAGCTCTTACATGCcaagaaaatatagaaatagataACATAAAAGATTCATTCTCCGACTCAGACAATGATGAAAAGGCTAACTTAGATGACGATATAAATATCCACAAAAaggaagaaataaatactcaCCTAGATTATGAAGTAAACTTTAAGTTAgatgaaacaaatataactGATTCAGAAGATGACTTGCCATTGGTTGATATTAGtacgaagaaaaatataaagaagtgTACAGAAGAAAAAGATATGAAAGTAAGGAAATATCGAAgaaaaACAGAAGTGGACgccaaagaaattatattagacGAAGAACAACAGAAAATGGAAATGCTGGAACGTTCCAAatcagaaaattatataaattcaccCTTTAAATGTGATTTATGCTACCGAGGGTTCGTGGATCCTGTAGCTTTTGAAAGACATAAGGAGAAACATGAtgagATGAGTGGTTCTCACGCGTGCCCGCTTTGCCAGCTCCGCTACTCGTCCCATAAGCGGCTCGCAGCGCACGTCGCCACACACGTGCGCAGGTACGCGTGCGCGCGCTGTCCGCACCTCGCGAGGACCAAacacCAAGCAAAAGCCCACGAGCAATGGCACGATGGTCACACTTACCCGTGTCAGCCATGTGGACGCGTGTTTACTAAGCCCACGTCTCTCCTGTCCCACGCGCGTCGTTGTCCAGCGGGAGTGGGGGTGGGCGTGGATGACGGGGAAAGTAGGGAGCGAGCGTGTCCACTATGTGGGGATACGTTTTCGCGCGGTCACGGACTACTTATGCATATGAGCAAGTCGCATAGGTTCCAGAAACAAGAGCCCCCCTCAGAGCCTGAGAGTGATCGCACTTGCAGCACTTGCTGTATAGTGTTCGCAAATAGTAAAGCCCGCGTGAGACACCTGCTCACATCGCGACGACACATACTGTATAATAgcaaGTCGGAGTGCGCTATATGCGGTGCGGTGGTGTCGGCTAGCATGCGCCACGCGCACACGCGCTCGCATTCGCGCGCGCTGCGACCGCCCCCAGCGCCCCCCGCCACCGCCACGCCTGCTCTCGCGCGCGCCCACTGCGACCAGtgtAAAGCAAGTTTCACAAGTCGTGCCAAGTTACAAAATCACATACGGAGAATGCACCTTGGCctcaaatacaacaaaaatattatatgcgaGATATGCGGGAAGAAGTGCACGTCGCTGGCGTCGCTGCGCTACCACCAGCGGCGCCACACGGGCGAGCGGCCGTACGCGTGCGGCGCGTGCGGGCTCGCGTTCGCGCGCGCGTCTCGCCTGCGCGCGCACTCCCGCAAGCACTCCGGCGAGCGCCCGCACGCCTGCGCGCAATGCCCGCGCGCCTTCGCGCAGCGCCCCGCGCTCACCAGGCACGCCAGGGTACACACAGGTGCTAAGCCCTACGGCTGTCATATTTGCAACAAACGCTTCAGCCAGTCCAACTCCCTCCACGCGCACGTACGCGCCCTGCACCTGAAGATCCCGCGGACGAGAACCCGCGACCACCTCGACACAACACAACCCCAAGTCGCGACCAACTTTAATGATTATGTACAGAATAGGGTGCAGTCATAG
Protein Sequence: MNANVNNYKLNVCRICLSSKDLPLFCLSNTPLKAIFEKLTDIDLNYTDISKICYICFARLKKCYILCQEAIIADKLLKEAVHCNVKPNQLWNFNKLSKSSTINIKFDPMDCNNKGLAKFKTEENEDILHDIQHIALTCQENIEIDNIKDSFSDSDNDEKANLDDDINIHKKEEINTHLDYEVNFKLDETNITDSEDDLPLVDISTKKNIKKCTEEKDMKVRKYRRKTEVDAKEIILDEEQQKMEMLERSKSENYINSPFKCDLCYRGFVDPVAFERHKEKHDEMSGSHACPLCQLRYSSHKRLAAHVATHVRRYACARCPHLARTKHQAKAHEQWHDGHTYPCQPCGRVFTKPTSLLSHARRCPAGVGVGVDDGESRERACPLCGDTFSRGHGLLMHMSKSHRFQKQEPPSEPESDRTCSTCCIVFANSKARVRHLLTSRRHILYNSKSECAICGAVVSASMRHAHTRSHSRALRPPPAPPATATPALARAHCDQCKASFTSRAKLQNHIRRMHLGLKYNKNIICEICGKKCTSLASLRYHQRRHTGERPYACGACGLAFARASRLRAHSRKHSGERPHACAQCPRAFAQRPALTRHARVHTGAKPYGCHICNKRFSQSNSLHAHVRALHLKIPRTRTRDHLDTTQPQVATNFNDYVQNRVQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00774694;
90% Identity: iTF_00779734;
80% Identity: -