Hsar006082.1
Basic Information
- Insect
- Heliconius sara
- Gene Symbol
- -
- Assembly
- GCA_917862395.2
- Location
- OU860785.2:14555336-14565857[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00056 0.042 14.7 0.4 1 23 261 283 261 283 0.98 2 11 0.013 0.93 10.5 1.2 1 23 290 312 290 312 0.96 3 11 4.1 3e+02 2.6 1.8 1 23 316 338 316 338 0.94 4 11 0.0023 0.17 12.8 0.1 1 22 343 364 343 364 0.93 5 11 0.0082 0.61 11.1 0.5 3 23 383 404 382 404 0.96 6 11 9.3 6.9e+02 1.5 1.7 2 22 420 440 420 444 0.91 7 11 3.2e-05 0.0024 18.6 0.8 3 23 490 511 489 511 0.97 8 11 2e-05 0.0015 19.3 1.0 3 23 522 542 520 542 0.97 9 11 0.0003 0.023 15.6 0.0 1 23 548 570 548 570 0.97 10 11 0.00013 0.0096 16.7 0.1 1 23 576 598 576 598 0.96 11 11 4e-05 0.0029 18.4 2.7 3 23 606 627 604 627 0.95
Sequence Information
- Coding Sequence
- atgaacgcgaatgataataattataatttgaatcaaAATGTTTGTAGAATATGTTTAAGTAGTAAAGATTTacctttattttgtttatccAATACTCCATTGAAAGCCATTTTTGAGAAATTAACGGATATTGATctaAACTACACAGATTTTAGTAAAGTCTGCTATATATGTTTTGCAAGActcaaaaaatgttatattttataccaaCAAGCCATCATTGCTGATAAATTGTTAAAAGAAGCTGTGCAGTGTAATGTAAAAccaAATCaactacaaaatttaaataaactatcaaAATCATccacaattaatataaaatttgatccAATTGACTGTAACAATAAAGTCCTTGCTGAAGTTAAAACAGAGGAAAATGAAGACATTTTACATGAAATTCAACATATAGCTCTCACATGCcaagaaaatatagaaacagATAACATAAAAGATTCATTCTCCGACTTGGACAATGATGAAAAGGCTAACTTAGACGACGACATAAATATCCACATAGAGGAAGAAATAAATACTCACTTAGATAATGAAGTAAACTTTAAGTTAGATGAAACAAATATAACTGATTCAGAGGATGACTTGCCATTGGTCGATATTAGTACGCAGAAGAATATAAAGAAGTGTACAGAAGAAAAGGCTatgaaagtaagaaaatatcgaagaaaaaCAGAAGTGGACgccaaagaaattatattagacGAAGAACAACAGAAAATGGAAATGCTGGAACGTTCCAAatcagaaaattatataaattcaccCTTTAAATGTGACTTATGTTACCGAGGGTTCGTCGATCCTGTAGCTTTTGAAAGACATAAGGAGAAACATGACgagATGAGTGGCCCTCACGCGTGCCCGCTCTGCCAGCTGCGCTACTCGTCGCACAAGCGGCTCGCGGCGCACGTCGCCACGCACGTGCGCCGGTACGCGTGCACGCGTTGTCCGCACCTCGCCAGGACCAAacaCCAAGCAAAAGCCCACGAGCAATGGCACGATGGCCATACTTACCCGTGTCAGCCGTGCGGACGTGTGTTTacTAAGCCCACTTCTCTCCTGTCCCACGCGCGCCGTTGTCCAGCGGGTGCGGGGCTGGGCGTGGACGAGGGGGAGAGTAAGGAGCGAGCGTGTCCACTATGTGGGGATACGTTCTCGCGCGGTCACGGACTGCTTATGCATATGAGCAAATCGCATAGATTCCAgAAACAAGAGCCCCCCTCAGAGCCTGAGAGTGATCGCACTTGCGACACTTGCTGTATAGTGTTCGCGAATAGCAAAGCCCGCGTGAGACACCTGCTCACATCGCGACGACACACAATGTATAATAGCGAGTCGGAGTGCGGCGTGTGCGGCGCGCTGGTGTCGGCCAGCATGCGGCACGCGCACACGCGCTCGCACGCGCGCGCGCTGCGCCCGCCCGCCGCGCGCCCCGCCGGGCCCGCCGCGCCCTGCGACCAGTGTAAAGCAAGTTTCACAAGTCGTGCCAAGTTACAAAATCACATCCGGAGAATGCACCTCGGtctcaaatataacaaaaacattatatgCGAGATCTGCGGGAAGAAGTGCACGTCGCTGGCGGCGCTGCGCTACCACCAGCGGCGCCACACGGGCGAGCGGCCCTACGCGTGCGGCGCGTGCGGGCTCGCATTCGCGCGCGCGTCGCGCCTGCGCGCGCACGCGCGGCGCCACTCCGGCGAGCGCCCGCACGCCTGCGCGCTGTGCCCGCGCGCCTTCGCGCAGCGCCCCGCGCTCACGCGCCACGCCAGGGTACACACAGGTGCTAAACCCTACGGCTGTCACATTTGCAACAAACGCTTCAGCCAGTCCAACTCCCTCCACGCGCACGTGCGTGCCCTGCACCTGAAGATACCGCGGACGAGAACCCGCGACCACCTCGATACAACACACGCACAAGTTGCGACCAACTTTAATGATTATGTACAGAATAGAGTGCAGTCATAG
- Protein Sequence
- MNANDNNYNLNQNVCRICLSSKDLPLFCLSNTPLKAIFEKLTDIDLNYTDFSKVCYICFARLKKCYILYQQAIIADKLLKEAVQCNVKPNQLQNLNKLSKSSTINIKFDPIDCNNKVLAEVKTEENEDILHEIQHIALTCQENIETDNIKDSFSDLDNDEKANLDDDINIHIEEEINTHLDNEVNFKLDETNITDSEDDLPLVDISTQKNIKKCTEEKAMKVRKYRRKTEVDAKEIILDEEQQKMEMLERSKSENYINSPFKCDLCYRGFVDPVAFERHKEKHDEMSGPHACPLCQLRYSSHKRLAAHVATHVRRYACTRCPHLARTKHQAKAHEQWHDGHTYPCQPCGRVFTKPTSLLSHARRCPAGAGLGVDEGESKERACPLCGDTFSRGHGLLMHMSKSHRFQKQEPPSEPESDRTCDTCCIVFANSKARVRHLLTSRRHTMYNSESECGVCGALVSASMRHAHTRSHARALRPPAARPAGPAAPCDQCKASFTSRAKLQNHIRRMHLGLKYNKNIICEICGKKCTSLAALRYHQRRHTGERPYACGACGLAFARASRLRAHARRHSGERPHACALCPRAFAQRPALTRHARVHTGAKPYGCHICNKRFSQSNSLHAHVRALHLKIPRTRTRDHLDTTHAQVATNFNDYVQNRVQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00774694;
- 90% Identity
- iTF_00779734;
- 80% Identity
- -