Hsal042638.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990120.1:743514-745172[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0062 99 4.5 0.0 26 48 87 109 84 115 0.90 2 8 0.11 1.8e+03 0.5 0.1 25 48 116 139 109 143 0.82 3 8 0.00092 15 7.2 0.3 21 48 171 198 166 205 0.89 4 8 0.37 5.9e+03 -1.1 0.0 25 48 205 228 199 230 0.83 5 8 0.00056 8.8 7.9 0.0 22 44 261 283 250 289 0.85 6 8 2e-05 0.32 12.5 0.2 16 52 323 359 321 359 0.87 7 8 1.5e-06 0.023 16.2 0.3 21 48 356 383 355 387 0.92 8 8 0.018 2.8e+02 3.1 0.3 24 48 389 413 384 417 0.86
Sequence Information
- Coding Sequence
- ATGGAGCCAGATATAGAACAGATCTACATAAAACCAGACATCGCGCATTTGAAGGTAGAAGTCGATTGTGAAGAGGAACAGAGCGGGAACCCCTACCAGTCCCCAGATGACGTGTTCGACATCAAGAGGGAGAACATCTCTGTGGATACAGAACAATACGAAGACCCAGTACCTgaagaaaatgaaaattctcCAAGAGCGAAAGATTCCATAGAGATAGTTGGTAAAGTGTACGAGAATGGCAAAGTCAATAGACTCCAGTGTCCACAGTGCGATAATAACTTCAAAAATAGAGCTAATTTGAAGCAGCATCTGAAGTTTGTGCATTCCTCAGAAGATGATATTGTAGAGTGTGATAAATGCTACAGGACATTCAAATCTGTGGGACATTTGCGGTCTCACATCCATTCAGTACATGCTGAAGAGAAGGAGGTGAGCTGTGAGCATTGTGGTAAGACTTTCTTGAACAAAAAACGTCTAAATAACCACATATTCTACTCTCACCCAGAACCAGAAGAAAGTGTCACTTGTTCTGTATGTTCTAAAGCTTTTAAACGGAGGTATAATTTGAAAATTCACATGAGACTCGTCCATCCAACGGAAGATAGATCCGTGCAATGCCCACATTGTGATAAAAAGTTCAAAGTAGATATGTTACTCCAGAGGCATATAAAATGGAGTCACCCGCAAGACGGTATGATGTATCGTTGCCCTGAATGTGGTCGGACGCTGCCATCTATCGCATGCTTCAGGAAACACATGCAGAATGTCCATTCAGAGTCCCAAGACGCCATTTGTAAAGTCTGCTGTAAAGTTTTCAAAACCGTCAAAACGTTGAAGCGTCATGAAAAGAACATTCATGGTGGAGAGAAAGTCGAAGTCAAACAGTACAAAGTAGGCGACCTGCCTTGTTCTCAATGTGATAAGAGATTTACCACTAACACAGCTTTATTCTGGCATTTTGAGAGACATCATTCTGAAAACAAAAGGAGCAACACTTGCCACATTTGCAGTAAGGAGCTGTCGGACCAAGGGAGTCTGAAAAGGCATTTAGAAATGGTGCATTCCGTGGAGCCCGCCAGCTGTCCTATATGCTCGAAAACTTTTAAAAGTCCAATGAACTTGCAGAGGCATGTTAGAGTTACCCACGCGCCCCCAGAAGCAGCGCAGAACTGCGACATTTGCAAGAAAACTTTCAAATGCTCAATGCATTTGCGTATTCACATAAACGCTGTCCATTCGACAGAAGGTATCTTCAACTGTGATATATGTAATAAAGAGTTCTCCTCCAAAAAATACATgctgaaacacaaaaaaacgcaTGTCGATGTCAAAGTCTTCCCATGCGGCGTTTgcaacaaattatttaaatgcGTCAATGACGTTAAAAAGCATGCAAAACGCGTGCACATGAAGGCCCacgttaaaacagaaaatgaAGAAACGAACACCGATTATTCTGAAGACGCTTCTAAAAGTATAGATTCTATAGATGAAGTTAGGCCACATGATACTGATGCCGTTAAAAATATGGATTCATTGAATTGCTTGAAATGTGGCAGTGATTTTGAGAATTCTGCAGAGTTGCACTCTCATATATTGAACTGTAGTGACGTTCCGCTGACCTCATTTGTTAAGGTTGAAATTgaagaaatttag
- Protein Sequence
- MEPDIEQIYIKPDIAHLKVEVDCEEEQSGNPYQSPDDVFDIKRENISVDTEQYEDPVPEENENSPRAKDSIEIVGKVYENGKVNRLQCPQCDNNFKNRANLKQHLKFVHSSEDDIVECDKCYRTFKSVGHLRSHIHSVHAEEKEVSCEHCGKTFLNKKRLNNHIFYSHPEPEESVTCSVCSKAFKRRYNLKIHMRLVHPTEDRSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSESQDAICKVCCKVFKTVKTLKRHEKNIHGGEKVEVKQYKVGDLPCSQCDKRFTTNTALFWHFERHHSENKRSNTCHICSKELSDQGSLKRHLEMVHSVEPASCPICSKTFKSPMNLQRHVRVTHAPPEAAQNCDICKKTFKCSMHLRIHINAVHSTEGIFNCDICNKEFSSKKYMLKHKKTHVDVKVFPCGVCNKLFKCVNDVKKHAKRVHMKAHVKTENEETNTDYSEDASKSIDSIDEVRPHDTDAVKNMDSLNCLKCGSDFENSAELHSHILNCSDVPLTSFVKVEIEEI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00773093;
- 80% Identity
- iTF_00773093;