Hsal042638.1
Basic Information
- Insect
- Hedya salicella
- Gene Symbol
- -
- Assembly
- GCA_905404275.1
- Location
- FR990120.1:743514-745172[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.9e-05 0.0033 19.1 1.0 2 23 87 109 86 109 0.94 2 14 0.00059 0.066 15.0 2.8 2 23 117 139 116 139 0.95 3 14 0.0038 0.42 12.5 2.7 2 23 146 168 145 168 0.92 4 14 3.9e-07 4.3e-05 25.0 0.8 2 23 176 198 175 198 0.96 5 14 3.8e-05 0.0043 18.8 1.2 2 23 206 228 205 228 0.96 6 14 0.00012 0.013 17.2 0.8 1 23 235 258 235 258 0.97 7 14 0.035 3.9 9.5 3.4 3 23 266 287 265 287 0.94 8 14 0.00012 0.013 17.2 2.1 2 23 303 324 302 325 0.93 9 14 9.7e-05 0.011 17.5 1.0 2 23 333 355 333 355 0.96 10 14 3.6e-07 4.1e-05 25.1 0.6 2 23 361 383 361 383 0.96 11 14 0.0086 0.96 11.4 3.6 3 23 392 413 390 413 0.94 12 14 4.7e-05 0.0053 18.5 3.5 1 23 419 441 419 441 0.98 13 14 1.8 2e+02 4.1 2.5 1 23 447 470 447 474 0.93 14 14 0.059 6.7 8.7 0.2 2 21 515 534 514 535 0.92
Sequence Information
- Coding Sequence
- ATGGAGCCAGATATAGAACAGATCTACATAAAACCAGACATCGCGCATTTGAAGGTAGAAGTCGATTGTGAAGAGGAACAGAGCGGGAACCCCTACCAGTCCCCAGATGACGTGTTCGACATCAAGAGGGAGAACATCTCTGTGGATACAGAACAATACGAAGACCCAGTACCTgaagaaaatgaaaattctcCAAGAGCGAAAGATTCCATAGAGATAGTTGGTAAAGTGTACGAGAATGGCAAAGTCAATAGACTCCAGTGTCCACAGTGCGATAATAACTTCAAAAATAGAGCTAATTTGAAGCAGCATCTGAAGTTTGTGCATTCCTCAGAAGATGATATTGTAGAGTGTGATAAATGCTACAGGACATTCAAATCTGTGGGACATTTGCGGTCTCACATCCATTCAGTACATGCTGAAGAGAAGGAGGTGAGCTGTGAGCATTGTGGTAAGACTTTCTTGAACAAAAAACGTCTAAATAACCACATATTCTACTCTCACCCAGAACCAGAAGAAAGTGTCACTTGTTCTGTATGTTCTAAAGCTTTTAAACGGAGGTATAATTTGAAAATTCACATGAGACTCGTCCATCCAACGGAAGATAGATCCGTGCAATGCCCACATTGTGATAAAAAGTTCAAAGTAGATATGTTACTCCAGAGGCATATAAAATGGAGTCACCCGCAAGACGGTATGATGTATCGTTGCCCTGAATGTGGTCGGACGCTGCCATCTATCGCATGCTTCAGGAAACACATGCAGAATGTCCATTCAGAGTCCCAAGACGCCATTTGTAAAGTCTGCTGTAAAGTTTTCAAAACCGTCAAAACGTTGAAGCGTCATGAAAAGAACATTCATGGTGGAGAGAAAGTCGAAGTCAAACAGTACAAAGTAGGCGACCTGCCTTGTTCTCAATGTGATAAGAGATTTACCACTAACACAGCTTTATTCTGGCATTTTGAGAGACATCATTCTGAAAACAAAAGGAGCAACACTTGCCACATTTGCAGTAAGGAGCTGTCGGACCAAGGGAGTCTGAAAAGGCATTTAGAAATGGTGCATTCCGTGGAGCCCGCCAGCTGTCCTATATGCTCGAAAACTTTTAAAAGTCCAATGAACTTGCAGAGGCATGTTAGAGTTACCCACGCGCCCCCAGAAGCAGCGCAGAACTGCGACATTTGCAAGAAAACTTTCAAATGCTCAATGCATTTGCGTATTCACATAAACGCTGTCCATTCGACAGAAGGTATCTTCAACTGTGATATATGTAATAAAGAGTTCTCCTCCAAAAAATACATgctgaaacacaaaaaaacgcaTGTCGATGTCAAAGTCTTCCCATGCGGCGTTTgcaacaaattatttaaatgcGTCAATGACGTTAAAAAGCATGCAAAACGCGTGCACATGAAGGCCCacgttaaaacagaaaatgaAGAAACGAACACCGATTATTCTGAAGACGCTTCTAAAAGTATAGATTCTATAGATGAAGTTAGGCCACATGATACTGATGCCGTTAAAAATATGGATTCATTGAATTGCTTGAAATGTGGCAGTGATTTTGAGAATTCTGCAGAGTTGCACTCTCATATATTGAACTGTAGTGACGTTCCGCTGACCTCATTTGTTAAGGTTGAAATTgaagaaatttag
- Protein Sequence
- MEPDIEQIYIKPDIAHLKVEVDCEEEQSGNPYQSPDDVFDIKRENISVDTEQYEDPVPEENENSPRAKDSIEIVGKVYENGKVNRLQCPQCDNNFKNRANLKQHLKFVHSSEDDIVECDKCYRTFKSVGHLRSHIHSVHAEEKEVSCEHCGKTFLNKKRLNNHIFYSHPEPEESVTCSVCSKAFKRRYNLKIHMRLVHPTEDRSVQCPHCDKKFKVDMLLQRHIKWSHPQDGMMYRCPECGRTLPSIACFRKHMQNVHSESQDAICKVCCKVFKTVKTLKRHEKNIHGGEKVEVKQYKVGDLPCSQCDKRFTTNTALFWHFERHHSENKRSNTCHICSKELSDQGSLKRHLEMVHSVEPASCPICSKTFKSPMNLQRHVRVTHAPPEAAQNCDICKKTFKCSMHLRIHINAVHSTEGIFNCDICNKEFSSKKYMLKHKKTHVDVKVFPCGVCNKLFKCVNDVKKHAKRVHMKAHVKTENEETNTDYSEDASKSIDSIDEVRPHDTDAVKNMDSLNCLKCGSDFENSAELHSHILNCSDVPLTSFVKVEIEEI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148678;
- 90% Identity
- iTF_00773458;
- 80% Identity
- iTF_00773458;