Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990099.1:1458296-1474321[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 1.6e-05 0.25 12.9 2.6 21 52 115 150 98 152 0.81

2 23 2.7e-05 0.42 12.1 3.1 21 52 166 201 161 203 0.79

3 23 2.7e-05 0.42 12.1 3.1 21 52 217 252 212 254 0.79

4 23 2.7e-05 0.42 12.1 3.1 21 52 268 303 263 305 0.79

5 23 2.7e-05 0.42 12.1 3.1 21 52 319 354 314 356 0.79

6 23 2.7e-05 0.42 12.1 3.1 21 52 370 405 365 407 0.79

7 23 2.7e-05 0.42 12.1 3.1 21 52 421 456 416 458 0.79

8 23 2.7e-05 0.42 12.1 3.1 21 52 472 507 467 509 0.79

9 23 2.7e-05 0.42 12.1 3.1 21 52 523 558 518 560 0.79

10 23 2.7e-05 0.42 12.1 3.1 21 52 574 609 569 611 0.79

11 23 2.7e-05 0.42 12.1 3.1 21 52 625 660 620 662 0.79

12 23 2.7e-05 0.42 12.1 3.1 21 52 676 711 671 713 0.79

13 23 2.7e-05 0.42 12.1 3.1 21 52 727 762 722 764 0.79

14 23 2.7e-05 0.42 12.1 3.1 21 52 778 813 773 815 0.79

15 23 2.7e-05 0.42 12.1 3.1 21 52 829 864 824 866 0.79

16 23 2.7e-05 0.42 12.1 3.1 21 52 880 915 875 917 0.79

17 23 2.7e-05 0.42 12.1 3.1 21 52 931 966 926 968 0.79

18 23 2.7e-05 0.42 12.1 3.1 21 52 982 1017 977 1019 0.79

19 23 1.3e-05 0.21 13.1 2.1 21 52 1033 1068 1028 1070 0.79

20 23 0.3 4.8e+03 -0.9 0.2 22 42 1090 1110 1086 1115 0.78

21 23 0.0054 85 4.7 0.1 20 44 1185 1209 1181 1217 0.89

22 23 0.17 2.7e+03 -0.1 0.1 21 49 1242 1270 1237 1274 0.85

23 23 0.099 1.6e+03 0.7 0.3 19 46 1471 1498 1445 1502 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	1.6e-05	0.25	12.9	2.6	21	52	115	150	98	152	0.81
2	23	2.7e-05	0.42	12.1	3.1	21	52	166	201	161	203	0.79
3	23	2.7e-05	0.42	12.1	3.1	21	52	217	252	212	254	0.79
4	23	2.7e-05	0.42	12.1	3.1	21	52	268	303	263	305	0.79
5	23	2.7e-05	0.42	12.1	3.1	21	52	319	354	314	356	0.79
6	23	2.7e-05	0.42	12.1	3.1	21	52	370	405	365	407	0.79
7	23	2.7e-05	0.42	12.1	3.1	21	52	421	456	416	458	0.79
8	23	2.7e-05	0.42	12.1	3.1	21	52	472	507	467	509	0.79
9	23	2.7e-05	0.42	12.1	3.1	21	52	523	558	518	560	0.79
10	23	2.7e-05	0.42	12.1	3.1	21	52	574	609	569	611	0.79
11	23	2.7e-05	0.42	12.1	3.1	21	52	625	660	620	662	0.79
12	23	2.7e-05	0.42	12.1	3.1	21	52	676	711	671	713	0.79
13	23	2.7e-05	0.42	12.1	3.1	21	52	727	762	722	764	0.79
14	23	2.7e-05	0.42	12.1	3.1	21	52	778	813	773	815	0.79
15	23	2.7e-05	0.42	12.1	3.1	21	52	829	864	824	866	0.79
16	23	2.7e-05	0.42	12.1	3.1	21	52	880	915	875	917	0.79
17	23	2.7e-05	0.42	12.1	3.1	21	52	931	966	926	968	0.79
18	23	2.7e-05	0.42	12.1	3.1	21	52	982	1017	977	1019	0.79
19	23	1.3e-05	0.21	13.1	2.1	21	52	1033	1068	1028	1070	0.79
20	23	0.3	4.8e+03	-0.9	0.2	22	42	1090	1110	1086	1115	0.78
21	23	0.0054	85	4.7	0.1	20	44	1185	1209	1181	1217	0.89
22	23	0.17	2.7e+03	-0.1	0.1	21	49	1242	1270	1237	1274	0.85
23	23	0.099	1.6e+03	0.7	0.3	19	46	1471	1498	1445	1502	0.83

Sequence Information

Coding Sequence: ATGTCTTGCAACTATTTATCAGTAAAACCAGAGCGGCAATGGGCGGCCGCTGATATTCTAACTGAAGACACCCTGCGAAATGAAAGCCGGCCTATCGTCGACGGTAGTAGTGGTGCCCAAGCctctgaaattaaaaaagaactgCATGTTAACGCAACCAAAGTTGAAGTAAAACGTGTGGCTACAGACTCAAGTTCAGATGGAGCCGTTCAGACAGAAGAGAAACCAGGGATAACTCTCCGGGTGGCAGCACCGGGCTCCCACAGAAGATGGGCGTGTCCCTTGTGCGGCAAGAGCTCGTGGTCGCCGGCGCACCTGCGCGTGCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTACGTACTGTCTCACCTGCGCGTGCACTCGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCGCGCTTCCGCACCCACGGCAACCTGGCGCGACACCTGCGCGCGCACGCCGGCCTCCGGCCCTTCGCCTGCCCGCACTGCCAGAGGAGGTTCTCCCAAAAGTCAGTGCTAATAAAGCACATACGAATCCACACAGGGGAGACCCCGTATTCGTGCAACATCTGCCACAAACAGTTTTCCCGGAGCTTCACCCTTGCCTGCCACCGCCGCGTCCATGGCGACATCGTCAAGGAAGAAAAACCCGTGAAACAACCACCGCCTGCCCCAGAGAAATGGACGTGCGAAGTGTGCAATAAGATCTTCAAAAACAAATcctacaaacacacacacatgcAAATCCATGCTCAGACTAAAGACTATCAGTGTCGTGAGTGCGATAAGAAGTTTAGTAATGAAGTGAGTCTGCTAAAACATGTGAATGTGCATTCGGAGCAGGTTAGGAAGTGCAGTGTTTGTGGCAAGCAGTTGAAGACTCAAGCGAATTTGGCGAGGCATATGCTGGTGCATACTGGGGAGCGGCCGTTTCCTTGCAGCTATTGCAGTCAGAGGTTTACCCAGAAGTCGGTGTTGGTTAAGCATGAGAGGATACACACAGGTGAAATGCCTTATGAATGTCAGGTCTGCTTGAAGAAGTTTTCTAGAAGCTTCACGCTAGAGAATCATCTGAGGCGCGTGCATAATAAGAAGGGAAGAATTGAGAAGTCGGAGAAGTTGAAAAAAGAAGTTGAGAAAGTAAAGTGTGAGATGAAGCCGTTTTGGTGCGAAAACTGCGATAACTGGTTCAGTAGTGAGGAGTTTTATGTACATGAATGTACACAAGGTGGGAAGTTTGATTTAGGTGAAGTTTGTGTTGATAATGAGCCAGGGATTGATTATAGCGATAACGAAGCAGATAAAAGGGAGAGTCTATTAACAGATATTAAAGAAGAATTCGAAATAGATGCACACCCAGATGATAATAGAGAAATCCTTGAAATTAAACGGAAAGTAGAGTCCGTTCATGACGAATCTGCGGCAGTTGAACATGAAGATGCTTTCAGAGCTTTTGATAATTCAATTACAAGAGCTGATACAGACAGACCTATAGTTTGCAAGGTGGAGACGGTGCAGGATGAAGACCCAAGCAAACAGTACCCTTGTACTGTATGTAGGAAGCGATTCGCGAACTGCTACCTGCTGGACCGCCACGAAAGAACACACACTGGCGAGAAGCCTTACTCTTGTGAGGATTGTGACAAAAGGTTCGCGCTCAGTGGGGACCTGAACCGGCACCGGCGGACCCACACCGGTGAGAAGCGCTACTCCTGCCCTCTCTGCCCCAAGCAGTTCACCCGCAGCAGCACCCTCAAGCACCACCGTCGGCTACACGACGCCGTGACGTCTGAGCCATCCCGAACTGtcaattaa
Protein Sequence: MSCNYLSVKPERQWAAADILTEDTLRNESRPIVDGSSGAQASEIKKELHVNATKVEVKRVATDSSSDGAVQTEEKPGITLRVAAPGSHRRWACPLCGKSSWSPAHLRVHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRYVLSHLRVHSGERPACCHVCGARFRTHGNLARHLRAHAGLRPFACPHCQRRFSQKSVLIKHIRIHTGETPYSCNICHKQFSRSFTLACHRRVHGDIVKEEKPVKQPPPAPEKWTCEVCNKIFKNKSYKHTHMQIHAQTKDYQCRECDKKFSNEVSLLKHVNVHSEQVRKCSVCGKQLKTQANLARHMLVHTGERPFPCSYCSQRFTQKSVLVKHERIHTGEMPYECQVCLKKFSRSFTLENHLRRVHNKKGRIEKSEKLKKEVEKVKCEMKPFWCENCDNWFSSEEFYVHECTQGGKFDLGEVCVDNEPGIDYSDNEADKRESLLTDIKEEFEIDAHPDDNREILEIKRKVESVHDESAAVEHEDAFRAFDNSITRADTDRPIVCKVETVQDEDPSKQYPCTVCRKRFANCYLLDRHERTHTGEKPYSCEDCDKRFALSGDLNRHRRTHTGEKRYSCPLCPKQFTRSSTLKHHRRLHDAVTSEPSRTVN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00773068;
90% Identity: iTF_00773068;
80% Identity: iTF_00773068;