Hnig003901.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hartigia nigra
Gene Symbol
PAXBP1
Assembly
GCA_031001745.1
Location
JARPRG010000272.1:801831-814566[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.6e-28 3.3e-24 86.0 2.4 2 272 541 750 540 752 0.92
2 2 0.82 7.3e+03 -3.8 0.0 43 90 1194 1241 1189 1244 0.84

Sequence Information

Coding Sequence
ATGTCGCTCTTCAATAAACCCAAGCGAAATATACGACGGCGGCCGTTCAATGACGAGGATGAAGATAATGAGAACAGGATGGAGACCGAGGACGCACAGCCGATCAAATTGAAAccgaagaagaaggataagCCAAAACAAACGCTCCTTAGCTTCGGAGAGGAGCTAGAAGAAGcTGATGATGGTGAAGTTTTTAAAGTGAAGAAATCCTCCAGAAGCAAAAAACTGATGAAACAGCTAGATcacgagaggaaaaaaaagaaaggtgaaGAGAAAATGCAAGTGGACTCTGAGCAAGCGAACATGTCCATTAAGCAGGAAAAAGATTTAGAAATAAAGACAGACGATCTAGTAgttaaaattaaaaatacaggaCCCCTAATCTTAAATGGAAGGGCTGCCCTAGTGGCTGGGAAGGATGACTATACGTCCGGAGAAGAGGACGATGATCCGAGTGGTCATAAATTCCGAAGGAATACTGATAGAGCcgatacaatgaaaatacttttagaAAGTGGTTGTATACCGGATGCAGCAATGATTCACGCAGCAAGAAAACGCAGACAAAAAGCTAGAGAATTGGGAACGGACTACATACCTATAGAAGAGCAAAGTGAAGATAAAGGGAAGTCAAGGTTAATCCGCGAAGAGGATCACGATAGAAGCGACGACGATGATTCTCAAGATCGAATTGATATGACCGTGAATACAGATGCTcgtgacaaagagaaaagaagagaagctTTCCTTGCATCGCAAGCTCAAGATAAACTTTCAGATGACGAGTGTGAGCATAGCATTGACGAGGAAGAGTGGGAAGCGCAACAGATTAGAAAAGGCGTTACTGGAGCGCAGatTGCAGCCGTTCAACAAGACTCTATTATGCAACAACAGTACTCGATGGGTATGAGCGTGAATCCAATGATGAGATCAGGGTTACCCGTGGATGTGTTAATGATGCCTGCTCCGCCGCCACCGCCATCTATACATCCGCCGGATCCAACGAAGATCGTACCAATTTCCCCGGAAGAAGTTGTCAATAAGATGCGTGAAAGatTGGACAGTTTGCGCGAGGTACACAGACGCCATCAACTTGATCAGGAACAATTAGAACAAGAGCTAGAGCAGACTCTTAAGGAATTGGACGAGGGTGAACTGCGTGCACCGCAGTTTGCACAGCGCTTCAGATATTACCAAGAGTTGCGTGGGTATGTCACTGACTTGGTAGAGTGTCTTGATGAGAAGCTGCCTCTCGTTGCGGGATTGGAGCAGCGCTGGTTAGAACTCTACGGGGAACGAACGACTGAACTGATGGAGAGGAGACGACAAGATACAAGAGATCAAGCTGAAGAAATAACAACAGCTGCCAGAGGACAAAGTATGAGGAGAGGTCCAGAAGATGAAGCTCGGATTCGTCGTGCTACAGAGAGAGAAGGCAGAAGAGCACGTCGTAGAAGAGCCAGAGAACTGACTCCGACGTTACCAAAACACATCGACGGCATGTCCAGCGACGATGAGGTCACCGAACAACAAAATCTTGCATTTAAACAGACAAAGGAGGAAATTGACAACGACagtaaagatatattttccgACGTCGTCGATGACTTCTGTACTGTTAGGGGTATATTATCGAAATTGGAATCCTGGAGAGAAACGGACTTAGATGCGTATATGGAAGCATATGTACCCTTATGTATACCTAAAATAATCTCCCCGGTTATTAGATTAAAACTTGTCACGTGGAATCCTATTATGgaaaGCACTGATCTAGAAAGAACGAAATGGTATAATACGTTACTACTGTATGCGTTGGATAATAAGGAAACTGAAGATTCTTTAAAACGCGATCCTGACGTCAGACTCGTGCCGTTTACGATGGAGAAAATAGTCCTTCCAAAACTCACGTCTATCGTCGAGAAAATATGGGATCCAATGTCAACTTCTCAGACCTTACGACTAGTAGGCACTGTGAGTCGTCTGATTAGGGATTATCCAAATTTGAACGACTCCAGTAAACAGTTAGAACTGCTGTTTAATGCTATATTAGATAAAATTAAGGCAGCTGTAGAGAACGATGTTTTTATACCGATATTTCCAAAACAAGTATTGGACACGAAGCACCAATTTTTCCAAAGGCAGTTTGCAATGGCTGTCAAGCTGCTGCGTAACTTGTTAAGTTGGCAAGGACTTCTCGGTGACACCCAATTAAAAAACTTGGCACTTGGATCACTTTTGAATCGATACCTCTTGGCTGGACTAAGAGTATCATCCCCAATCGATGCTCTTGCCAAAGCAAATATGATAATGAGTACTTTACCACGAGCATGGCTTCAGGGAGAAACAATTGAACAACTCAGGATGTTTGCTACATTAATTCAACAACTCAGTGAACAATTGGATCAAGCGAATCCGGCTCACAACATAgcagagaatatttttgaaacgggaaaagaatatttgtattcgtaTAATGCCACTTCAAATTCCGGTGTTTTGTTGCCTACTACGGCTACTTCATCATGGGGTATTTATGGCACGTTGGTGGTCCAAGTCCTGGAGGAGAATGTTGTCTCGATGCAGTTGAAAGATTTACAAATGGACATGCAAAATGGACCGCCTGACAGGCAAAGAGAATTCATAAATGTCGGCAATCCGGTTGACGAAATGTCAAAGCCTTTTAAAGTGACATACAAAAAGGGATTAATCGAAAACTTCAGTATTGAAGCAGAACCCGTTTGGGCgacaaatattaaaagaagCATCGTAGGAATTTTACAGCTGGATTTAGCTAGTTTAGAGAAACAGGCTGCATTTTATTCTACAGAGGTCAATCACTATGGTCAATGTAATATCGAGTATGTAGTCAGTACTCAATCggacgatgaaatttttattatgaaatctACCGATCCAAGGACTTGCGTTGGGCATCCATATTGGACTTGGAGTAATGTTCCACGAATGCTGTGTCCCAATAATGATCAAaATCCAGTATTAAAATCGAGCGAAAGACTTTATAGGGTGAAGTCAAGTGATGCCAAACatactattttatatattaatgcaaCAGGAGGAGTATATATACAGCCATTTCAAAGTCTCGGTGAGGCGCAGTTCCTATTTACACAACaagtttttactttattatccACGCACAATGTAAGGGATAAAATATCTACTACTCAATTGCACGCTACAACCCTTCAGCATGAACTTCcggaaaatgattttactcAAGGAAGAGGGTTACACGATAAAGACGATGTGTTTGAATCTATAGGAGTTTTGCTGGATAGATTGAGCCAGCGACTTGAAAATCCTGGATTGGATacagaaattcataatttacataatactACAATTTCTCAACTTCTCTTCTATCTCAGCATGCTGGATAAGGCAGATCTACAAGTggcgtataataaaatatctggtACCAGTTATAAAGAGGAAACCATAAGGAATATGTTCCTCGAAGCGTTACCGCAGGTCGGAAGCAAAGAAGCAGCCTTGTTCGTTCAAGATTTAGTTTTAAACAGAAAAGTCTCTGATATAACTGCAATATATCTTCTGACGCATTTACCATTTCACGTGAGAAAACCGGATGTCCAATTGTTAGTAAGTTTGCAAACTTTGCTCAATCCTCCTGCAAAAGTATCACCGGAAGTGCACAATACGGGAATTCTCACATACGGcacattaatttacaaaacatGTTTGCTGTACTGTCCATATGAAATGTTGGATGATTACGTGCGACTTTATCTTGACAAATTTacagaAAGCAAGCAGTATGAGAAAAAGATGGTTTGGCTTGAGGGGTTGGCTAATATACAATTGGGAAGAGTTGTGGAATTTTTAGAGCCTATAGCCAGTGGTGTAAATTCGGAATCTCGACATTTGCGTTTTTTGGCTGCCTGGGCATCTTTGCCAACTGCTCCTTTAAGACCAGACGTGATATATCCAGTCTACTGGCCAATTTTAGTGAATCGCTCGGAACCTTTGGAAATGCGTATAGTGGCATTGCCTTTATTAATTGCCTCAAGTCCTTCGCCGAGTAGATTGATATCACTTTATTGGTATATGCAAGGAGAGCCAGATCAGCATTTGTACAATTTCTTCTACACCACCTTAAAATCTATGGAGCATACAAATTTTCCGTGCTACACGCACATcGGAAGTATTGCTGCACAATTTACACGTGTACTTAGAAAACCAACGAGTAATCAATACATAGTGACTGGTAATTATTTACTTGACTATCAAGATACATTCAGAAACTTTGGTGCTATGTTACACGCAATTATTATTGCTGATCCTCGTACGAACATCCCAACGGTATCTCATATTACATTAAACAATTATGGTATTGGTACTAACTTGAATCACGTATCACTCTATATCAAGGACGATGGAGTTTTCAGCGGAGTACTAGACAATATTCAGAATTTTACTCGCGTCAAGGAAGTCTTGCAGAGTTTTAAATTACCAGAAAGAATAGAGAAGCCTCTGCATGTggaaataattgcaaaagtACAACAGAAGGCTGTTCTGTGCatgtatttcaatgaaactaaCATCGAAAACGCTTTCAAATTTTTATTGTCAATGGCTAAGAATGCTTATCATGTATACGAAAATATGGAATTCCACATTAATCAACAGCGTATTAACGTACCTATTACTATGGAATCGGTGCAAGTTACTGATTTGGGTACTAACGTAAAAATTGCTGGTACTGCTACGTCCTTGTTTTCTATGAGAGGAAATTTCACTCATACGTCGGTTGGTCGTAATAATCACGTTATATTACGcACGTCGATTCATGGAACCGAATCAGTTGCCACTTACAATCCTTTTACTGATTTATGGCACGGAGCTGAACGTGAACGATCCATTCATGGTTATTTTCCTCTCAATGTGACAGTAGGATTTGgggataaattatttttgtcatacaTAACACCCAGTgAATACATTAGAACTGGAATGACAGCACATGTAAGAACTGTGACATCTGTTATCAGTACcagaaagaagacaaaattgaaaaatatatgtaagacGTGCCAGGAAATATATACTGTGAGAAAACTACCAGAAAAGATATTAGAGgAGACAAAACTCTTTGACATCGAAGTTTCTGAATTGGGTGGGCAGTTGTGCGTAAAGGTATTTGATTGTGAAAGTCAAATATCACACGATGAGCTTCTACAGGATGTGCTATCATCACATCATAGCAATTATCaAATTTGGCCTATTATTCGATCCGCAATGGTGGGTACACACTTTGTGGATTATTTCACTTACGTACCTCCAGGAGGGAGCTGTGGATTGGCAGCATATATAGAACCTCACAATTTGCATTTACAAGAAAGTATTGGAAAACCAACAGAGGTGAAACTGGAATATAGCAAAAGTGAAAAGTATCACTTGATCTCTTTAACGCGTCGTGAATTAGGATCTTTGGATGTCCTTCAACAGTGGAACGTTgcaattttctatgaaataacAAGTTGGATATctgatacattaaaaataaaagccagCCGTACAGCTCCCGGCGAGAAAGTCATGAAAATTTGCATAGacagtgaaagagaaagtgtTTGGGAATGGGACTTTTTAAGCACAAAACCAAGTGGCCCgtcttcaattaaattaaatatcgtatGGGGACCATCCGATTCAGCTAAAGGAAAATGTACAGGTTCTTCCGTATTATTAAATCTAGTTGGTGAAATTAGTCCTGAGCAATTAATCGAAAGCGCACAGAACAAATGGCCTTATCAGGAGTGCAAGGAACAATCGTATGGAAAACAATTCACTCCGTACACAGAAGCCTGTTACTTAGTTTCCAGGGAATTGTCGACATTGCGAAAATATCAGATATTTGTCAGATACGAGAATCTACCTGAAAGATTGTTAAAGGCTGCTTGGAGGCTGCGTGCTATTTATGACCTAATGGGAGGAAATAGTAGTGTTGCTTTGAATACtgatcaattttttgtaaccGCAACATTCCCAAAGGAATCTAGTTCAGGAGAATTGCATCTCAATAGAGACAAAGtggttataaaatataatccatATATCGTCGATTACTTTTTGACCAGAACAAGATTCCATAAGTACATAGACAGTCCACTggttcaaatatttttcagCAGCTGTGTATTAACACCCACGAGCATAAGAACATCATATAATGTGTCAATTTTGTTAAACAAAGTTCAAGAGGTACTGTTGCTTGGTGAATGTGATGAAGACAGTCCAAGTTTTGCAATATCTGCTATAAACAATGCTGATggtgttaatattatttttaacgatgaaACTGATAgcctgaaaattatttctaacaaGGAAGGTGGTGCGGTTTATAACTATGCAGAATATTTACCATTAGAACAAAACTTTCAGTTTCAGTCtgtaaatgataaaaaatTGAGGTTGGATACCAAATCTGTAGATCTTATATAtcctcaatttttattattcatacacTGGACTCAAGAGCAAGTATTGATCTTTTATCCAAATATTCTCAAAGAATCTGAATGTGGACTGTGTACTGCCAGAAGCCCGGACGTAAaagacgtatatataaaactttag
Protein Sequence
MSLFNKPKRNIRRRPFNDEDEDNENRMETEDAQPIKLKPKKKDKPKQTLLSFGEELEEADDGEVFKVKKSSRSKKLMKQLDHERKKKKGEEKMQVDSEQANMSIKQEKDLEIKTDDLVVKIKNTGPLILNGRAALVAGKDDYTSGEEDDDPSGHKFRRNTDRADTMKILLESGCIPDAAMIHAARKRRQKARELGTDYIPIEEQSEDKGKSRLIREEDHDRSDDDDSQDRIDMTVNTDARDKEKRREAFLASQAQDKLSDDECEHSIDEEEWEAQQIRKGVTGAQIAAVQQDSIMQQQYSMGMSVNPMMRSGLPVDVLMMPAPPPPPSIHPPDPTKIVPISPEEVVNKMRERLDSLREVHRRHQLDQEQLEQELEQTLKELDEGELRAPQFAQRFRYYQELRGYVTDLVECLDEKLPLVAGLEQRWLELYGERTTELMERRRQDTRDQAEEITTAARGQSMRRGPEDEARIRRATEREGRRARRRRARELTPTLPKHIDGMSSDDEVTEQQNLAFKQTKEEIDNDSKDIFSDVVDDFCTVRGILSKLESWRETDLDAYMEAYVPLCIPKIISPVIRLKLVTWNPIMESTDLERTKWYNTLLLYALDNKETEDSLKRDPDVRLVPFTMEKIVLPKLTSIVEKIWDPMSTSQTLRLVGTVSRLIRDYPNLNDSSKQLELLFNAILDKIKAAVENDVFIPIFPKQVLDTKHQFFQRQFAMAVKLLRNLLSWQGLLGDTQLKNLALGSLLNRYLLAGLRVSSPIDALAKANMIMSTLPRAWLQGETIEQLRMFATLIQQLSEQLDQANPAHNIAENIFETGKEYLYSYNATSNSGVLLPTTATSSWGIYGTLVVQVLEENVVSMQLKDLQMDMQNGPPDRQREFINVGNPVDEMSKPFKVTYKKGLIENFSIEAEPVWATNIKRSIVGILQLDLASLEKQAAFYSTEVNHYGQCNIEYVVSTQSDDEIFIMKSTDPRTCVGHPYWTWSNVPRMLCPNNDQNPVLKSSERLYRVKSSDAKHTILYINATGGVYIQPFQSLGEAQFLFTQQVFTLLSTHNVRDKISTTQLHATTLQHELPENDFTQGRGLHDKDDVFESIGVLLDRLSQRLENPGLDTEIHNLHNTTISQLLFYLSMLDKADLQVAYNKISGTSYKEETIRNMFLEALPQVGSKEAALFVQDLVLNRKVSDITAIYLLTHLPFHVRKPDVQLLVSLQTLLNPPAKVSPEVHNTGILTYGTLIYKTCLLYCPYEMLDDYVRLYLDKFTESKQYEKKMVWLEGLANIQLGRVVEFLEPIASGVNSESRHLRFLAAWASLPTAPLRPDVIYPVYWPILVNRSEPLEMRIVALPLLIASSPSPSRLISLYWYMQGEPDQHLYNFFYTTLKSMEHTNFPCYTHIGSIAAQFTRVLRKPTSNQYIVTGNYLLDYQDTFRNFGAMLHAIIIADPRTNIPTVSHITLNNYGIGTNLNHVSLYIKDDGVFSGVLDNIQNFTRVKEVLQSFKLPERIEKPLHVEIIAKVQQKAVLCMYFNETNIENAFKFLLSMAKNAYHVYENMEFHINQQRINVPITMESVQVTDLGTNVKIAGTATSLFSMRGNFTHTSVGRNNHVILRTSIHGTESVATYNPFTDLWHGAERERSIHGYFPLNVTVGFGDKLFLSYITPSEYIRTGMTAHVRTVTSVISTRKKTKLKNICKTCQEIYTVRKLPEKILEETKLFDIEVSELGGQLCVKVFDCESQISHDELLQDVLSSHHSNYQIWPIIRSAMVGTHFVDYFTYVPPGGSCGLAAYIEPHNLHLQESIGKPTEVKLEYSKSEKYHLISLTRRELGSLDVLQQWNVAIFYEITSWISDTLKIKASRTAPGEKVMKICIDSERESVWEWDFLSTKPSGPSSIKLNIVWGPSDSAKGKCTGSSVLLNLVGEISPEQLIESAQNKWPYQECKEQSYGKQFTPYTEACYLVSRELSTLRKYQIFVRYENLPERLLKAAWRLRAIYDLMGGNSSVALNTDQFFVTATFPKESSSGELHLNRDKVVIKYNPYIVDYFLTRTRFHKYIDSPLVQIFFSSCVLTPTSIRTSYNVSILLNKVQEVLLLGECDEDSPSFAISAINNADGVNIIFNDETDSLKIISNKEGGAVYNYAEYLPLEQNFQFQSVNDKKLRLDTKSVDLIYPQFLLFIHWTQEQVLIFYPNILKESECGLCTARSPDVKDVYIKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01198662; iTF_01199402; iTF_01395121; iTF_01473923; iTF_00252067; iTF_00291534; iTF_00292944; iTF_01475448; iTF_01474685; iTF_00298308; iTF_00296012; iTF_00293718; iTF_00297548; iTF_00252814; iTF_00255078;
90% Identity
iTF_00252067;
80% Identity
-