Hruf021604.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- ZFX
- Assembly
- GCA_951394225.1
- Location
- OX596278.1:39289674-39294957[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.61 5.9e+03 -0.7 0.0 27 46 139 158 131 165 0.77 2 6 0.0038 37 6.4 0.1 21 44 161 184 144 188 0.86 3 6 0.0012 12 8.0 0.2 21 46 189 214 185 222 0.86 4 6 0.0034 33 6.6 0.0 21 52 217 248 214 249 0.89 5 6 0.015 1.4e+02 4.5 0.1 21 52 245 276 243 276 0.88 6 6 1.3e-05 0.12 14.4 0.1 23 44 275 296 271 304 0.86
Sequence Information
- Coding Sequence
- ATGAGTGAAGAGAGCACTTCCGATATTTATGAGGAAAATTGTGAATCGGATCCAGAGCCTATGTGCTATTTcccttttattaaaatagaaaatgatGGATCTGTCTTAATAGATGGCCAACCTAGTAGTCAAGATGCTTCGCAAATGAGTATAGAATCTGCAGAAGTTCTAGTTTTACCTTTCACTGGAATAGGTGATCCATTAGATAGTTTACAAAATCCAGACAAATACCAAGAAGTAATAGACGACGTAGCAGATGAAACAATTGTAGAAAATATTACCACGGGAGATGATGCAAGTATTTCTGAAACATTACTACATGATCACAATTATGAAGATCTAAACCGATCTCAAGAAGTTAAATCTGGAATAGTATCATATATTGTTGATCAAGTGGACCAAATTAGGAATAATTGTACGTTTTGTGGTAAAGCATTCAATACACCAGCAAGTTTAAAAAGGCATTTACGTATTCATACTGGAGAAAGACCATTTCAATGCCAAATATGTGATAAATATTTCTCCCAACAAAGTAATTTATGGAAACATGTTCGAACTCATACAGgCGAACGACCGTTCGAATGTCCACATTGCAATAAACGTTTTTCTCAACGGGCAAACATGAAAAAGCATTTAATTATCCATACGGGGGAACGTCCATTTGTATGTTTCCTTTGTGCACGAGGTTTTACACAACAAGCTAATCTTAGCAAACACATGAGACTACATACAGGTGAAAAACCATTTGGATGCTCCTACTGTGATAAACGATTTACCCAGCGATCGAACCTTCAAAAACACGAGCATCTGCACGAGGGGATCAAACCATACACCTGCGAAATTTGTTTTCAGGCTTTCACCCAACAGAGCAACCTTCGTAAACATGAAATGATGCATAACAACATAAAAAAGTTTGTGTGCGACGTGTGCAACAAAGGCTATGTACAAAAAGTGAGCTTGCTAAAGCACAAGCAGCGCTGTTGCGAAGACAAGCTTGCATCCGACGATGCTTCTGGCGAAGATAAAATCATATGTGATCAAGTGGAACTTCTCAAACAATACGAGACTATTGAAGCGCAGTGCCTTGACGATGAAGAAGAGGAGGCCGCTATTATTTTACAAGCAGGGAAAGatttcatttttactaattaa
- Protein Sequence
- MSEESTSDIYEENCESDPEPMCYFPFIKIENDGSVLIDGQPSSQDASQMSIESAEVLVLPFTGIGDPLDSLQNPDKYQEVIDDVADETIVENITTGDDASISETLLHDHNYEDLNRSQEVKSGIVSYIVDQVDQIRNNCTFCGKAFNTPASLKRHLRIHTGERPFQCQICDKYFSQQSNLWKHVRTHTGERPFECPHCNKRFSQRANMKKHLIIHTGERPFVCFLCARGFTQQANLSKHMRLHTGEKPFGCSYCDKRFTQRSNLQKHEHLHEGIKPYTCEICFQAFTQQSNLRKHEMMHNNIKKFVCDVCNKGYVQKVSLLKHKQRCCEDKLASDDASGEDKIICDQVELLKQYETIEAQCLDDEEEEAAIILQAGKDFIFTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767779;
- 90% Identity
- iTF_00767779;
- 80% Identity
- iTF_00769054;