Hrub053878.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- ZFX
- Assembly
- GCA_963082715.1
- Location
- OY720458.1:53340371-53347903[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.98 9.1e+03 -0.8 0.0 26 46 138 158 130 161 0.77 2 6 0.0052 48 6.5 0.1 21 44 161 184 143 188 0.85 3 6 0.0024 22 7.6 0.3 21 46 189 214 185 220 0.89 4 6 0.0049 45 6.6 0.1 21 52 217 248 213 249 0.89 5 6 0.021 1.9e+02 4.5 0.1 21 52 245 276 243 276 0.88 6 6 1.8e-05 0.16 14.4 0.1 23 44 275 296 271 304 0.86
Sequence Information
- Coding Sequence
- ATGAGTGAAGAGAGCACTTCCGATATATATGAGGAAAATTGTGAATCGGATCCAGAGCCTATGTGCTATTTCccttttattaaaatagaaaatgatGGATCTGTCTTAATAGATGGCCAACCTAGTAGTCAAGATGCTTCGCAGATGAGTATAGAGTCTGCAGAAGTTCTAGTTTTACCTTTCACTGGAATAGTTGATCCATTAGATACTTTGCAAGTTGCAGAGAGATATCAAGAAatAATAGAGGACGTAGCCGATGAAACAATTGTAGAAAATATTACCACAGCCGATGATGCAAGTATTTCTGAAACATTACTACATGATCACAATTATGAAGATCTAAACAGATCTCAAGAAGTAAAATCTGGAATAGTATCATATATTGTTGATCAAGCGGATCAGCTTAGGAATAATTGCACGTTTTGTGGTAAAGCATTCAATACACCAGCAAGTTTAAAAAGGCATTTACGTATTCATACTGGAGAACGGCCATTTCAATGCCAAATATGTGATAAATATTTCTCCCAGCAAAGTAATTTATGGAAACATGTTCGGACTCATACAGGCGAACGACCATTCGAATGTCCACATTGCAATAAACGTTTTTCTCAACGGGCAAACATGAAGAAGCATTTAATTATCCATACGGGGGAACGTCCATTTGTATGTTTCCTTTGTAGACGAGGTTTTACACAACAAGCTAATCTTAGCAAACACATGAGATTACATACAGgtGAGAAGCCTTTCGGATGCTCGTACTGTGATAAACGTTTCACCCAACGATCAAACCTCCAAAAACACGAGCATTTGCACGAGGGGATCAAACCATACACCTGCGAGATTTGTTTTCAAGCTTTCACCCAACAGAGCAACCTTCGAAAACATGAAATGATGCATAACAACATAAAGAAGTTtgtgtgcgacgtgtgcaaCAAAGGCTATGTACAAAAAGTGAGCTTGCTAAAGCACAAGCAGCGCTGTTGTGGCGACAAGCTTGCATCCGACGATCCTTCTGGCGAAGATAAAATCATATGTGATCAAGTGGAACTTCTCAAACAATACGAGACTATTGAAGCGCAGTGCCTTGACGATGAAGAAGAGGAGGCCGCTATTATTTTGCAAGCAGGGAAAGATTTCATTTTCACTAATTAa
- Protein Sequence
- MSEESTSDIYEENCESDPEPMCYFPFIKIENDGSVLIDGQPSSQDASQMSIESAEVLVLPFTGIVDPLDTLQVAERYQEIIEDVADETIVENITTADDASISETLLHDHNYEDLNRSQEVKSGIVSYIVDQADQLRNNCTFCGKAFNTPASLKRHLRIHTGERPFQCQICDKYFSQQSNLWKHVRTHTGERPFECPHCNKRFSQRANMKKHLIIHTGERPFVCFLCRRGFTQQANLSKHMRLHTGEKPFGCSYCDKRFTQRSNLQKHEHLHEGIKPYTCEICFQAFTQQSNLRKHEMMHNNIKKFVCDVCNKGYVQKVSLLKHKQRCCGDKLASDDPSGEDKIICDQVELLKQYETIEAQCLDDEEEEAAIILQAGKDFIFTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767473; iTF_01104983; iTF_01105243; iTF_00769308; iTF_00769054;
- 90% Identity
- iTF_00767473; iTF_01104983; iTF_01105243; iTF_00769308; iTF_00769054;
- 80% Identity
- iTF_00767473;