Hruf061404.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596291.1:21573714-21579378[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0027 26 6.9 0.1 26 48 87 109 77 112 0.86 2 9 0.0011 10 8.2 2.1 24 45 118 138 106 148 0.79 3 9 0.29 2.8e+03 0.4 0.0 26 46 176 196 171 202 0.81 4 9 0.00013 1.3 11.1 0.1 26 45 219 238 210 244 0.91 5 9 0.0013 13 7.9 1.1 18 47 242 270 239 276 0.84 6 9 1.5 1.5e+04 -1.9 0.0 27 45 278 296 274 299 0.88 7 9 0.049 4.8e+02 2.8 0.0 25 45 429 449 421 454 0.83 8 9 0.0028 27 6.8 0.4 21 45 456 479 449 490 0.74 9 9 0.23 2.2e+03 0.7 0.0 26 45 488 507 484 513 0.88
Sequence Information
- Coding Sequence
- ATGGAGTACTGCTACGTCGACACAACAGCGCAAGATACTTCCAACACTCAACAAGGAGTTTTTGTTAAAGAAAATTCTCTTAGAAACAACTCCAGTGTTCGTGAATTCGAAGAAAATAACGAAGAACCGATGAGTATTGAcacaatttcaattaaaaatgaaCCACAAGAAAACGTTGATGAGCACACTTTTTATGAAAACCTAACCAAAAAGGAtaacaacataaatattagtaaagaTAGACAAATAACACAATATGAGTGTCCGATTTGTCATGAACTTTTTGTGGAAAGTGCAAATCTGATAACACATATGAAAAAAAGTCATACACGATACCTGTCAAACAGACTGAGAGCACAATGTCCtatttgcaataaaattctACGACTTTGTAATCTAACAAGACACTTAAAATATCATGTTGGAATAAAAGATTTCCAGTGTTCTAtctgtaataaatcatttacagATAAATGCAATTTGATATATCACATGGGAATTCATACCGGAAgaaaaaaagatttttgttgTCCGATATGCGATAAAAGATTTGTGAAAGATAAATTTCTAACCAAACACATGAAGGTACAtagtaagaaaaaaaaagtcaagaatgtaaagaaagaaaaaaaagaagaaGTAAGTGTGATTAATAACTGTCCTCTATGCCACCAAGTATTTGTTGAGAGTAAAAACCTCATCAAACATATCGAAAGCCATACTAGAATCAAGACTGATAAAAGATCCCAATGTGCTATTTGCAGTAAATCTGTACGCCATTGCAATCTGAAAAGACATTTAAAACTTCATGTTGGAATCAAGGATTTTCGTTGTACCGTTTGTAATAAAGCATTTACACAGAACGAAAGTTTGAAATATCATATGTCAGTCCATACTggtgtcaaaattaaaaagtttcaaTGTGATTTATGTCGCaagaaatttttaagaatatgcCTCCTGAAAGCCCATATGTTAACTCATAGTGATCCTAGTGCACAAAATATAGACGATGGAAGTACGGCGCAAGGAcgaaaagaacaaaataatgaaCAGATTTGTGTTCAAGATAAACAGATGGAGGAATATTCTACAGGTAACCataaaaacgaagaaaaaaattctgttcaagAAAAATTCGTAGAAGAAAAGTTGAATGAAGAACAACCTATGAAACAAAACCCTACAGACTCTAAATATTGTAACGAAAATATTGAAGACAGTTCACAGGGTTTAGCAAAAGACAATATAAATACTTGTGAAGATAACCAAATTAGTACTGACAATAAATGTCTAATATGTCATAAACTAATTTTTGACAGTGAAAAGTTGATAAAACATATGAAAAATCActttgaaatttattcagaCAAAAAGGCACAATGTCCTATTTGCAGTAAATTTGTATATCTGTGTAATATAAAACGACATTTAAAATCGCACGTTGGAATCAAGGACTTCCATTGCCCTTTATGCAACAAATTTTTTACGCAGAAAGAAAGCCTAAAATACCATTTCACAATTCATACtggcgtaaaaataaaaaagtttgagtGCGACATTTGCCATAAAAAATTTGGAAAGAAATACCTCTGGACAAAACATATAACGACTCATACTGTAATAAAACAGCCTCACTGTACTGTATGTAAAGGAACATGTACAGAGACAAGCAGCGGCGACGCGAATATCGAGTGCGCAGCACCGAcagagaataaaaataaaaaaaacatttccattaataaaaaaacacccaagaaaaaaacaaatgaatcaaACAACGCAGATGTGATTACACTACAAGAAAAAAATGATCAgaaatttgaagaaatatttattaaggaAGAACCAGTTGAAGATGATGATTATCTTAATAAGAGTGATAAAATCCTGGAACAAAACTCCAATAATTCTAAACACAACAAAAGCGCAGACATCGATAAAAGAAGTGGACAGAATAACGAAAAATTCTTGGAAGAATGTTCTACACAGTCTGAATGTTATAAGGTTAGAAATGTTGAAAACATTTTAGTGAAAGAAGAATCCCGGGAAGGAAGTTCCAATGATCATGAATTTTATGATGATTTTGTCCAGGTTATAGTGAAGaatgaaatatga
- Protein Sequence
- MEYCYVDTTAQDTSNTQQGVFVKENSLRNNSSVREFEENNEEPMSIDTISIKNEPQENVDEHTFYENLTKKDNNINISKDRQITQYECPICHELFVESANLITHMKKSHTRYLSNRLRAQCPICNKILRLCNLTRHLKYHVGIKDFQCSICNKSFTDKCNLIYHMGIHTGRKKDFCCPICDKRFVKDKFLTKHMKVHSKKKKVKNVKKEKKEEVSVINNCPLCHQVFVESKNLIKHIESHTRIKTDKRSQCAICSKSVRHCNLKRHLKLHVGIKDFRCTVCNKAFTQNESLKYHMSVHTGVKIKKFQCDLCRKKFLRICLLKAHMLTHSDPSAQNIDDGSTAQGRKEQNNEQICVQDKQMEEYSTGNHKNEEKNSVQEKFVEEKLNEEQPMKQNPTDSKYCNENIEDSSQGLAKDNINTCEDNQISTDNKCLICHKLIFDSEKLIKHMKNHFEIYSDKKAQCPICSKFVYLCNIKRHLKSHVGIKDFHCPLCNKFFTQKESLKYHFTIHTGVKIKKFECDICHKKFGKKYLWTKHITTHTVIKQPHCTVCKGTCTETSSGDANIECAAPTENKNKKNISINKKTPKKKTNESNNADVITLQEKNDQKFEEIFIKEEPVEDDDYLNKSDKILEQNSNNSKHNKSADIDKRSGQNNEKFLEECSTQSECYKVRNVENILVKEESREGSSNDHEFYDDFVQVIVKNEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00769097;
- 90% Identity
- iTF_00769097;
- 80% Identity
- iTF_00769097;