Hruf061404.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596291.1:21573714-21579378[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4e-05 0.003 19.8 0.4 1 23 86 109 86 109 0.98 2 12 0.0066 1.4 11.3 2.7 2 23 120 140 120 140 0.97 3 12 1.2e-06 0.00026 23.1 2.4 1 23 146 168 146 168 0.97 4 12 2.9e-05 0.0063 18.7 3.5 1 23 175 197 175 197 0.98 5 12 5.7e-05 0.013 17.8 0.6 3 23 220 240 219 240 0.97 6 12 0.078 17 7.9 5.1 2 23 250 270 249 270 0.97 7 12 5.9e-07 0.00013 24.0 1.3 1 23 276 298 276 298 0.98 8 12 0.005 1.1 11.7 3.1 1 23 306 328 306 328 0.99 9 12 0.032 6.9 9.2 2.3 2 23 430 451 429 451 0.97 10 12 0.4 88 5.7 2.6 2 23 461 481 461 481 0.96 11 12 0.00028 0.061 15.6 4.6 1 23 487 509 487 509 0.95 12 12 6.8e-05 0.015 17.6 3.3 1 23 517 539 517 539 0.98
Sequence Information
- Coding Sequence
- ATGGAGTACTGCTACGTCGACACAACAGCGCAAGATACTTCCAACACTCAACAAGGAGTTTTTGTTAAAGAAAATTCTCTTAGAAACAACTCCAGTGTTCGTGAATTCGAAGAAAATAACGAAGAACCGATGAGTATTGAcacaatttcaattaaaaatgaaCCACAAGAAAACGTTGATGAGCACACTTTTTATGAAAACCTAACCAAAAAGGAtaacaacataaatattagtaaagaTAGACAAATAACACAATATGAGTGTCCGATTTGTCATGAACTTTTTGTGGAAAGTGCAAATCTGATAACACATATGAAAAAAAGTCATACACGATACCTGTCAAACAGACTGAGAGCACAATGTCCtatttgcaataaaattctACGACTTTGTAATCTAACAAGACACTTAAAATATCATGTTGGAATAAAAGATTTCCAGTGTTCTAtctgtaataaatcatttacagATAAATGCAATTTGATATATCACATGGGAATTCATACCGGAAgaaaaaaagatttttgttgTCCGATATGCGATAAAAGATTTGTGAAAGATAAATTTCTAACCAAACACATGAAGGTACAtagtaagaaaaaaaaagtcaagaatgtaaagaaagaaaaaaaagaagaaGTAAGTGTGATTAATAACTGTCCTCTATGCCACCAAGTATTTGTTGAGAGTAAAAACCTCATCAAACATATCGAAAGCCATACTAGAATCAAGACTGATAAAAGATCCCAATGTGCTATTTGCAGTAAATCTGTACGCCATTGCAATCTGAAAAGACATTTAAAACTTCATGTTGGAATCAAGGATTTTCGTTGTACCGTTTGTAATAAAGCATTTACACAGAACGAAAGTTTGAAATATCATATGTCAGTCCATACTggtgtcaaaattaaaaagtttcaaTGTGATTTATGTCGCaagaaatttttaagaatatgcCTCCTGAAAGCCCATATGTTAACTCATAGTGATCCTAGTGCACAAAATATAGACGATGGAAGTACGGCGCAAGGAcgaaaagaacaaaataatgaaCAGATTTGTGTTCAAGATAAACAGATGGAGGAATATTCTACAGGTAACCataaaaacgaagaaaaaaattctgttcaagAAAAATTCGTAGAAGAAAAGTTGAATGAAGAACAACCTATGAAACAAAACCCTACAGACTCTAAATATTGTAACGAAAATATTGAAGACAGTTCACAGGGTTTAGCAAAAGACAATATAAATACTTGTGAAGATAACCAAATTAGTACTGACAATAAATGTCTAATATGTCATAAACTAATTTTTGACAGTGAAAAGTTGATAAAACATATGAAAAATCActttgaaatttattcagaCAAAAAGGCACAATGTCCTATTTGCAGTAAATTTGTATATCTGTGTAATATAAAACGACATTTAAAATCGCACGTTGGAATCAAGGACTTCCATTGCCCTTTATGCAACAAATTTTTTACGCAGAAAGAAAGCCTAAAATACCATTTCACAATTCATACtggcgtaaaaataaaaaagtttgagtGCGACATTTGCCATAAAAAATTTGGAAAGAAATACCTCTGGACAAAACATATAACGACTCATACTGTAATAAAACAGCCTCACTGTACTGTATGTAAAGGAACATGTACAGAGACAAGCAGCGGCGACGCGAATATCGAGTGCGCAGCACCGAcagagaataaaaataaaaaaaacatttccattaataaaaaaacacccaagaaaaaaacaaatgaatcaaACAACGCAGATGTGATTACACTACAAGAAAAAAATGATCAgaaatttgaagaaatatttattaaggaAGAACCAGTTGAAGATGATGATTATCTTAATAAGAGTGATAAAATCCTGGAACAAAACTCCAATAATTCTAAACACAACAAAAGCGCAGACATCGATAAAAGAAGTGGACAGAATAACGAAAAATTCTTGGAAGAATGTTCTACACAGTCTGAATGTTATAAGGTTAGAAATGTTGAAAACATTTTAGTGAAAGAAGAATCCCGGGAAGGAAGTTCCAATGATCATGAATTTTATGATGATTTTGTCCAGGTTATAGTGAAGaatgaaatatga
- Protein Sequence
- MEYCYVDTTAQDTSNTQQGVFVKENSLRNNSSVREFEENNEEPMSIDTISIKNEPQENVDEHTFYENLTKKDNNINISKDRQITQYECPICHELFVESANLITHMKKSHTRYLSNRLRAQCPICNKILRLCNLTRHLKYHVGIKDFQCSICNKSFTDKCNLIYHMGIHTGRKKDFCCPICDKRFVKDKFLTKHMKVHSKKKKVKNVKKEKKEEVSVINNCPLCHQVFVESKNLIKHIESHTRIKTDKRSQCAICSKSVRHCNLKRHLKLHVGIKDFRCTVCNKAFTQNESLKYHMSVHTGVKIKKFQCDLCRKKFLRICLLKAHMLTHSDPSAQNIDDGSTAQGRKEQNNEQICVQDKQMEEYSTGNHKNEEKNSVQEKFVEEKLNEEQPMKQNPTDSKYCNENIEDSSQGLAKDNINTCEDNQISTDNKCLICHKLIFDSEKLIKHMKNHFEIYSDKKAQCPICSKFVYLCNIKRHLKSHVGIKDFHCPLCNKFFTQKESLKYHFTIHTGVKIKKFECDICHKKFGKKYLWTKHITTHTVIKQPHCTVCKGTCTETSSGDANIECAAPTENKNKKNISINKKTPKKKTNESNNADVITLQEKNDQKFEEIFIKEEPVEDDDYLNKSDKILEQNSNNSKHNKSADIDKRSGQNNEKFLEECSTQSECYKVRNVENILVKEESREGSSNDHEFYDDFVQVIVKNEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00769307;
- 90% Identity
- iTF_00769307;
- 80% Identity
- iTF_00769307;