Basic Information

Insect: Harpalus rufipes
Gene Symbol: -
Assembly: GCA_951394225.1
Location: OX596290.1:22498126-22503549[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00086 8.3 8.5 0.0 21 48 59 86 51 89 0.85

2 12 0.00074 7.2 8.7 0.6 19 48 156 184 141 186 0.77

3 12 0.18 1.7e+03 1.1 0.0 22 45 305 328 300 339 0.87

4 12 2.3 2.2e+04 -2.5 0.0 27 47 338 358 334 360 0.88

5 12 2.5e-05 0.25 13.4 0.1 20 48 480 508 471 511 0.88

6 12 0.53 5.1e+03 -0.5 0.0 27 45 544 562 540 564 0.91

7 12 3.7 3.6e+04 -3.2 0.0 25 43 632 650 629 653 0.73

8 12 0.038 3.7e+02 3.2 0.0 26 45 785 804 777 809 0.89

9 12 1.8 1.8e+04 -2.2 0.0 26 45 813 832 804 835 0.82

10 12 2.9 2.8e+04 -2.8 0.0 27 46 871 890 869 892 0.88

11 12 0.0026 26 6.9 0.0 23 48 1665 1690 1662 1694 0.90

12 12 0.8 7.7e+03 -1.0 0.0 25 47 1724 1746 1706 1749 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00086	8.3	8.5	0.0	21	48	59	86	51	89	0.85
2	12	0.00074	7.2	8.7	0.6	19	48	156	184	141	186	0.77
3	12	0.18	1.7e+03	1.1	0.0	22	45	305	328	300	339	0.87
4	12	2.3	2.2e+04	-2.5	0.0	27	47	338	358	334	360	0.88
5	12	2.5e-05	0.25	13.4	0.1	20	48	480	508	471	511	0.88
6	12	0.53	5.1e+03	-0.5	0.0	27	45	544	562	540	564	0.91
7	12	3.7	3.6e+04	-3.2	0.0	25	43	632	650	629	653	0.73
8	12	0.038	3.7e+02	3.2	0.0	26	45	785	804	777	809	0.89
9	12	1.8	1.8e+04	-2.2	0.0	26	45	813	832	804	835	0.82
10	12	2.9	2.8e+04	-2.8	0.0	27	46	871	890	869	892	0.88
11	12	0.0026	26	6.9	0.0	23	48	1665	1690	1662	1694	0.90
12	12	0.8	7.7e+03	-1.0	0.0	25	47	1724	1746	1706	1749	0.83

Sequence Information

Coding Sequence: ATGGAAGACATTTCTGTTAAAGAAGAGTGTGAAGAAGGATATGAACTCAGTGAAGGTGATGTGCACAGTGCAATGAAAATAGAATATGAAGAGACTGTATTAAAAAGTGATAATGGATTTGAAGAAAttcttattaaagaagaaccggaCGATCAAATCAAGGAAAATAATGAAGACGAGAAAAAAAGACAGTGTCCAATATGTTATAAAGTGTTTTCAGTACCTGGTAATATGATAAAACATGTGAATAATACGCATAATGGAATCAAAAAATACCATTGTAACTTATGTAGTAAATCATTTACCGAGAAAGCTAGTTTGAAATACCATATGACTATACACACtggcaaaaaacaaaaatttgagTGTTCTATTTGTAGTAAGTCGTACACTACGAAAAGTACATTAACAAGACATATAAATAGTCATACAAATGACACGACACAGGACAGTGCGTCTTGCAGTAaccaaaataaagaaaaaagtgAGTGTCctgtttgtaataaaataatactgcGCACCAATTTGAGAAAACATTTGAGAAACACACACGGAGGAGTTAAAGATTATCATTGTAACATATGTAATAAATCGTATGTCGAAAAAGCCAGTTTGAAATACCATATGACGAGCCATATAGGCAAAAAAGAATTTGAGTGTGATGTATGTCATCAGTTGTTTCCAAATAATAATACCTTAAAGTATCATTTGAACACTCATCTTAATAGTGACGATAAAATCTCTAAAGATAATCAGTGTAATGAATGTAACAAaacatttgcaaataaatacagtttAGAATACCATATAAATGCCCATAAAGGCATCAAACAATTTGAGTgccaaatatgttttaaatcatTCGCACACAAAGGCGTCCTGAATAAACATTTAATCGTTCATAAACTGAACGACCAAGCACATACTTGTACCATATGCagtaaaactttcaaatatgaGAAAACTTTAGAAAGTCACATGAAAGCCCATGAGGGAATAAAAGATTTTGAATGCCCGAAATGTCATAAGTTATTTGCCGTTAAAAAATACCTACACGTACATTTAAAACTGCACTCATTGGATGATCAAACAGTTATTAACAATCAGATTCACGTAGACAGTACTGAATCGTCGAATGATACTTTCATTGAAGACAAACAATGTAATGATGAACTTCAAACCAAAAATCCGCAATTGCTTGCACTTTTAAAAACACCTACACCGATTTACAACCACACAGATAGTACCAACAATGcggaaacaaatacaaatatggAAGCCATTTTTGTCAAAGAAGAACACCAACTTGACAAAAATATAGAACATATTTTGAAATCGGGTATTCAAAAATTTGGAGAAACTAATATCAAAGAACTGATGAATTGTGCAGACGACAATATTTCAGAAACATGTAATGAAGAAAAAAGCCCCAAGATTTCTGATGAGCAAAAACGAAAATGCCCTATTTGCGGTAAAATATTCGCCCAGTCTCGTAGTATcggaaaacacataaaaaataaacattctggaatcaaaaattttcgttgtaatttatgtaataaagcATATGTAGATACAACCGGGCTTAAATACCACATGGCGACACATATTGGCAGAAAAGAATTTGAGTGTAACATATGCCACCAGTTATTCCCAAATAGTAATAAGTTAAAGTACCATTTAAGCACTCATGGTCGTGGTGATGATGAGAAACAAGAAAATCCTCGATGTGATCTGTGTAACAAATCATTTGTGAACAAATACGGTTTGGAATACCATATGAATGCGCATAAAGGCGTAAAAAAATTTAAGTGCTCGATATGTCCTAAGCAATTTCTACATAGAGGCGCCctcaataaacatttaaaaattcataaactgGGCGATAAAAAACATACTTGTACCATATGTAGTAAAacttttaaacataaaattactTTAGAGAGCCACATGAAGGCCCATGATGGTATAAAAGATTTTAAATGTCCAAAATGTCATAAATCGTTTTCGCTGAAAATATACTTGCTCAAACATGTAAGGATGCATTCATCTGAAGATcaggcatttatttacaatcagATGCACGCAAACACCATCGACTCTTCGAAGGATTTGAGAGTAATTGAACCGAAGAAAGACAGCGAAGTTAGCAACAATCAGACAGAAACACACCCAATAAGTAAAGATATTCTATATCCAACAACTCTTGACTTATTCACAGAGAAGCAAGACGAACACGCCGATTATACTGACGACATTTCTATAGATGAAGAAGTGTGCGAAATAATTCCGTCTGAACTTGAAGAACAACCAGAGGACAGCCACATAGACTGTGAAGATAACAATAAATTACAGTGCCCAATTTGTGATAAAACATTTTCACATGGTAGCAATTTGagcaaacatttaaaaaaacactcagaaaacgaagaattacattgtaatatatgtattaaaacatttataaacaaCGACGCCTTGACTAAACATTTAGAAGATCATAAAATGAACGATTGgaaacatatttgtactgtttgTAATAAAcactttaaaaagaaaaaaagtttAGAATGTCACATGAAAGCTCACGAAGGTGTAAAAGATTTCGAGTGCCCGAAATGCAATAAGTCGTTTGCCGCTagaaaatacttaaataaacatttaaaattgcaTGACACCATTATTCACAATCAGATACACGCAGATAATTCGTCGAAGGATAGTAATTCGACCGTAGAAAACATCGAAGATATTTTTGTTAAAGAAGAATACGACCCAGATAAACccattaataaatttgaaaagactATCATTACTGAACTGACAGGGTTTAAGGACAACAAAATACAGTATCCTGAGTCAGACATGTACCCAAATTTAATACCGCTTACTTCGATTTACAATGAGGAGCACACAGATAGTACCAACCAAGCGATCatagaaaaaatgaatatagaATATATCTCGGAAGGAGAGAGTATTGTATCgggaacaaataataaaaattttgaagacaTTGAACCACCCGTCATAGACAACAACTACAAccaaaattcagaaataaataataaatttgaagagTCTCTCATTACAGACCCGACAGGGTTTAAGGACAACAAAATACAGTATCCTACGTATCCTGAATCGTACCCAAATTTAATACCGCTTACATCGATTTACAATGAGGACCACACAGCTAACACCACCCAAGCGATCgtagaaacaaatataaatgaacttgatgaaaaaattaatatagaatatatctCGGAAGGAGAGAGTATTGTATCgggaacaaataataaaaattttgaagacaTTGAACCATCCGTCGTAGACAACAACTACAACCCAAATTcggaaataagtaataaatttgaaGAGACAATCATTATAGATCCGGCAGGGTTTAAGGACAACAAAATACAGTATCCTGAATCGTACCCAAATTTAATACCGCTTAAATCGATTTACAATGAGGACCACACAGCTAACACCACCCAAGCGATCgtagaaacaaatataaatgaacttgatgaaaaaattaatatagaatatatctCGGAAGGAGAGAGTATTGTATCgggaacaaataataaaaattttgaagacaTTGAACCATCCGTCGTAGACAACAACTACAACCCAAATTcggaaataagtaataaatttgaaGAGACAATCATTATAGATCCGGCAGGGTTTAAGGACAACAAAATACAGTATCCTGAATCGTACCCAAATTTAATACCGCTTAAATCGATTTACAATGAGGACCACACAGCTAGCACCACCCAAGCGATCgtagaaacaaatataaatgaacttgatgaaaaaattaatatagaatatatctCGGAAGAAGAGCGTATTCCATTgggaacaaataataaaaatgttgaagaCTTTATTGAACCACCCGTCGTAAACAACTACAACCCAAATTcggaaataagtaataaatttgaaGAGACAATCATTATAGATCCGGCAGGGTTTAAGGACAACAAAATACAGTATCCTGAATCGTACCCAAATTTAATACCGCTTAAATCGATTTACAATGAGGACCACACAGCTAGCACCACCCAAGCGATCGtagaaacaaatacaaatgaacttgatgaaaaaatgaatacagaataTATCTCGGAAGGAGAGAGTATTGCATCgggaacaaataataaaaatgttgaagaCTGTATTGAACCACCCGTCGTAAACAACTACAACCCAAATTcggaaataagtaataaatttgaaGAGACAATCATTATAGATCCGGCAGGGTTTAAGGACAACAAAATACAGTATCCTGAATCGTACCCAAATTTAATACCGCTTAAATCGATTTACAATGAGGACCACACAGCTAGTACCACCCAAGCGATCGtagaaacaaatacaaatgaacttgatgaaaaaattaatatagaaaatatctcGGAAAAAGAGACTATCATTATAGATCCGACAGGGTTTAAGGACAACAAAATACAGTATCCGACGTATCCTGAGTATGACATGTACCCAAATTTAATACCGCTTACATCGATTTACAATGATAGCACCACCCAATCGATCACAGACACAAATACAAATGAAGAGAACATTACATCGGGAACAAATttcgaagacattactgaacccGTCGTAGACAACAACTACAACCAAAATTCGTTGTTTGATAATATGAGAACACCTTTAAGATACACACAAATCGGAAAAAAATTTCATTGTAACTTATGTAATAAAACGTTTACAGACAAAACCAAACTAATATATCACATAACCACACATATTGGTAAAAAAGAATTTGAGTGTGATATATGCCACCAGTTATTCCTAAATAATAATACCCTACAGTATCATTTAAACACTCATCTTGGTAGTGATGATAACATCTCTAAAGATCATCAATGCAATGAATGTCAAATGTCTTTTAAGTATAAACAAAGTTTGACAAATCATATGATTGCTCATAATGGTATAAAACCATTTGAATGTACAACTTGTTATAAGTCGTTTAGAAAGAAAAGCGACTTGAAAAAACATATAGATCTTCATAAATTGAGCGACCGAGAGTATATTTGCAGTATTTGCACCAGaccttttaaacataaaaaaacttTTGAAAGCCATATGAAAGCTCATCAAGGTATCAAAGATTTTGAATGCCCCAAATGTGATAAGACGTTTTCCCAGAAAAGCTCCAtgttgaaacatttaaaattgcaTTCATTGGATgatcaaacatttatttacagTCAGATGCACTCTTCTGGCAGTGACTCGTTCAAGGACAATAGTTTGACagtagaaaatattgaagataTTTTTGTTAAAGAAGAACATGATCTGTTGGATATAAGTGGTAATAAATTTGAAGAGTCTCTCATTGAAGAACCGAAGAAAGCTACATAG
Protein Sequence: MEDISVKEECEEGYELSEGDVHSAMKIEYEETVLKSDNGFEEILIKEEPDDQIKENNEDEKKRQCPICYKVFSVPGNMIKHVNNTHNGIKKYHCNLCSKSFTEKASLKYHMTIHTGKKQKFECSICSKSYTTKSTLTRHINSHTNDTTQDSASCSNQNKEKSECPVCNKIILRTNLRKHLRNTHGGVKDYHCNICNKSYVEKASLKYHMTSHIGKKEFECDVCHQLFPNNNTLKYHLNTHLNSDDKISKDNQCNECNKTFANKYSLEYHINAHKGIKQFECQICFKSFAHKGVLNKHLIVHKLNDQAHTCTICSKTFKYEKTLESHMKAHEGIKDFECPKCHKLFAVKKYLHVHLKLHSLDDQTVINNQIHVDSTESSNDTFIEDKQCNDELQTKNPQLLALLKTPTPIYNHTDSTNNAETNTNMEAIFVKEEHQLDKNIEHILKSGIQKFGETNIKELMNCADDNISETCNEEKSPKISDEQKRKCPICGKIFAQSRSIGKHIKNKHSGIKNFRCNLCNKAYVDTTGLKYHMATHIGRKEFECNICHQLFPNSNKLKYHLSTHGRGDDEKQENPRCDLCNKSFVNKYGLEYHMNAHKGVKKFKCSICPKQFLHRGALNKHLKIHKLGDKKHTCTICSKTFKHKITLESHMKAHDGIKDFKCPKCHKSFSLKIYLLKHVRMHSSEDQAFIYNQMHANTIDSSKDLRVIEPKKDSEVSNNQTETHPISKDILYPTTLDLFTEKQDEHADYTDDISIDEEVCEIIPSELEEQPEDSHIDCEDNNKLQCPICDKTFSHGSNLSKHLKKHSENEELHCNICIKTFINNDALTKHLEDHKMNDWKHICTVCNKHFKKKKSLECHMKAHEGVKDFECPKCNKSFAARKYLNKHLKLHDTIIHNQIHADNSSKDSNSTVENIEDIFVKEEYDPDKPINKFEKTIITELTGFKDNKIQYPESDMYPNLIPLTSIYNEEHTDSTNQAIIEKMNIEYISEGESIVSGTNNKNFEDIEPPVIDNNYNQNSEINNKFEESLITDPTGFKDNKIQYPTYPESYPNLIPLTSIYNEDHTANTTQAIVETNINELDEKINIEYISEGESIVSGTNNKNFEDIEPSVVDNNYNPNSEISNKFEETIIIDPAGFKDNKIQYPESYPNLIPLKSIYNEDHTANTTQAIVETNINELDEKINIEYISEGESIVSGTNNKNFEDIEPSVVDNNYNPNSEISNKFEETIIIDPAGFKDNKIQYPESYPNLIPLKSIYNEDHTASTTQAIVETNINELDEKINIEYISEEERIPLGTNNKNVEDFIEPPVVNNYNPNSEISNKFEETIIIDPAGFKDNKIQYPESYPNLIPLKSIYNEDHTASTTQAIVETNTNELDEKMNTEYISEGESIASGTNNKNVEDCIEPPVVNNYNPNSEISNKFEETIIIDPAGFKDNKIQYPESYPNLIPLKSIYNEDHTASTTQAIVETNTNELDEKINIENISEKETIIIDPTGFKDNKIQYPTYPEYDMYPNLIPLTSIYNDSTTQSITDTNTNEENITSGTNFEDITEPVVDNNYNQNSLFDNMRTPLRYTQIGKKFHCNLCNKTFTDKTKLIYHITTHIGKKEFECDICHQLFLNNNTLQYHLNTHLGSDDNISKDHQCNECQMSFKYKQSLTNHMIAHNGIKPFECTTCYKSFRKKSDLKKHIDLHKLSDREYICSICTRPFKHKKTFESHMKAHQGIKDFECPKCDKTFSQKSSMLKHLKLHSLDDQTFIYSQMHSSGSDSFKDNSLTVENIEDIFVKEEHDLLDISGNKFEESLIEEPKKAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00768997;
90% Identity: iTF_00768997;
80% Identity: iTF_00768997;