Hruf059840.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpalus rufipes
Gene Symbol
-
Assembly
GCA_951394225.1
Location
OX596290.1:22498126-22503549[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.00021 0.047 16.0 0.1 2 23 64 86 64 86 0.95
2 27 0.00014 0.031 16.6 3.3 1 23 92 114 92 114 0.98
3 27 4.3e-07 9.4e-05 24.5 1.9 1 23 121 143 121 143 0.98
4 27 0.075 16 8.0 0.5 2 23 163 184 162 184 0.95
5 27 0.00014 0.03 16.6 2.7 1 23 190 212 190 212 0.98
6 27 0.00089 0.19 14.0 2.0 1 23 218 240 218 240 0.98
7 27 6.5e-06 0.0014 20.8 0.6 2 23 252 273 251 273 0.97
8 27 8.3e-05 0.018 17.3 1.1 1 23 279 301 279 301 0.98
9 27 7.4e-05 0.016 17.5 3.5 1 23 308 330 308 330 0.97
10 27 0.0027 0.6 12.5 4.0 1 23 336 358 336 358 0.98
11 27 0.00033 0.071 15.4 0.3 2 23 486 508 486 508 0.96
12 27 0.00013 0.029 16.7 0.6 1 23 514 536 514 536 0.98
13 27 0.0015 0.33 13.3 2.7 1 23 542 564 542 564 0.98
14 27 2.9e-05 0.0064 18.7 0.4 2 23 576 597 576 597 0.97
15 27 0.00032 0.07 15.4 1.7 1 23 603 625 603 625 0.98
16 27 7.9e-05 0.017 17.4 5.1 1 23 632 654 632 654 0.97
17 27 1.9e-05 0.0041 19.3 3.9 1 23 660 682 660 682 0.99
18 27 9e-07 0.0002 23.5 2.2 2 23 785 806 784 806 0.97
19 27 0.0025 0.56 12.6 0.7 2 23 813 834 812 834 0.94
20 27 0.12 25 7.4 8.4 1 23 841 863 841 863 0.96
21 27 1.4e-05 0.0031 19.7 1.4 1 23 869 891 869 891 0.98
22 27 0.00012 0.025 16.8 4.4 1 23 1578 1600 1578 1600 0.98
23 27 0.04 8.7 8.9 2.3 1 23 1606 1628 1606 1628 0.98
24 27 5.5e-05 0.012 17.9 2.7 1 23 1639 1661 1639 1661 0.97
25 27 1.2e-05 0.0026 19.9 2.8 1 23 1667 1689 1667 1689 0.96
26 27 0.00016 0.034 16.4 3.2 1 23 1696 1718 1696 1718 0.97
27 27 7.3e-07 0.00016 23.8 1.8 1 23 1724 1746 1724 1746 0.98

Sequence Information

Coding Sequence
ATGGAAGACATTTCTGTTAAAGAAGAGTGTGAAGAAGGATATGAACTCAGTGAAGGTGATGTGCACAGTGCAATGAAAATAGAATATGAAGAGACTGTATTAAAAAGTGATAATGGATTTGAAGAAAttcttattaaagaagaaccggaCGATCAAATCAAGGAAAATAATGAAGACGAGAAAAAAAGACAGTGTCCAATATGTTATAAAGTGTTTTCAGTACCTGGTAATATGATAAAACATGTGAATAATACGCATAATGGAATCAAAAAATACCATTGTAACTTATGTAGTAAATCATTTACCGAGAAAGCTAGTTTGAAATACCATATGACTATACACACtggcaaaaaacaaaaatttgagTGTTCTATTTGTAGTAAGTCGTACACTACGAAAAGTACATTAACAAGACATATAAATAGTCATACAAATGACACGACACAGGACAGTGCGTCTTGCAGTAaccaaaataaagaaaaaagtgAGTGTCctgtttgtaataaaataatactgcGCACCAATTTGAGAAAACATTTGAGAAACACACACGGAGGAGTTAAAGATTATCATTGTAACATATGTAATAAATCGTATGTCGAAAAAGCCAGTTTGAAATACCATATGACGAGCCATATAGGCAAAAAAGAATTTGAGTGTGATGTATGTCATCAGTTGTTTCCAAATAATAATACCTTAAAGTATCATTTGAACACTCATCTTAATAGTGACGATAAAATCTCTAAAGATAATCAGTGTAATGAATGTAACAAaacatttgcaaataaatacagtttAGAATACCATATAAATGCCCATAAAGGCATCAAACAATTTGAGTgccaaatatgttttaaatcatTCGCACACAAAGGCGTCCTGAATAAACATTTAATCGTTCATAAACTGAACGACCAAGCACATACTTGTACCATATGCagtaaaactttcaaatatgaGAAAACTTTAGAAAGTCACATGAAAGCCCATGAGGGAATAAAAGATTTTGAATGCCCGAAATGTCATAAGTTATTTGCCGTTAAAAAATACCTACACGTACATTTAAAACTGCACTCATTGGATGATCAAACAGTTATTAACAATCAGATTCACGTAGACAGTACTGAATCGTCGAATGATACTTTCATTGAAGACAAACAATGTAATGATGAACTTCAAACCAAAAATCCGCAATTGCTTGCACTTTTAAAAACACCTACACCGATTTACAACCACACAGATAGTACCAACAATGcggaaacaaatacaaatatggAAGCCATTTTTGTCAAAGAAGAACACCAACTTGACAAAAATATAGAACATATTTTGAAATCGGGTATTCAAAAATTTGGAGAAACTAATATCAAAGAACTGATGAATTGTGCAGACGACAATATTTCAGAAACATGTAATGAAGAAAAAAGCCCCAAGATTTCTGATGAGCAAAAACGAAAATGCCCTATTTGCGGTAAAATATTCGCCCAGTCTCGTAGTATcggaaaacacataaaaaataaacattctggaatcaaaaattttcgttgtaatttatgtaataaagcATATGTAGATACAACCGGGCTTAAATACCACATGGCGACACATATTGGCAGAAAAGAATTTGAGTGTAACATATGCCACCAGTTATTCCCAAATAGTAATAAGTTAAAGTACCATTTAAGCACTCATGGTCGTGGTGATGATGAGAAACAAGAAAATCCTCGATGTGATCTGTGTAACAAATCATTTGTGAACAAATACGGTTTGGAATACCATATGAATGCGCATAAAGGCGTAAAAAAATTTAAGTGCTCGATATGTCCTAAGCAATTTCTACATAGAGGCGCCctcaataaacatttaaaaattcataaactgGGCGATAAAAAACATACTTGTACCATATGTAGTAAAacttttaaacataaaattactTTAGAGAGCCACATGAAGGCCCATGATGGTATAAAAGATTTTAAATGTCCAAAATGTCATAAATCGTTTTCGCTGAAAATATACTTGCTCAAACATGTAAGGATGCATTCATCTGAAGATcaggcatttatttacaatcagATGCACGCAAACACCATCGACTCTTCGAAGGATTTGAGAGTAATTGAACCGAAGAAAGACAGCGAAGTTAGCAACAATCAGACAGAAACACACCCAATAAGTAAAGATATTCTATATCCAACAACTCTTGACTTATTCACAGAGAAGCAAGACGAACACGCCGATTATACTGACGACATTTCTATAGATGAAGAAGTGTGCGAAATAATTCCGTCTGAACTTGAAGAACAACCAGAGGACAGCCACATAGACTGTGAAGATAACAATAAATTACAGTGCCCAATTTGTGATAAAACATTTTCACATGGTAGCAATTTGagcaaacatttaaaaaaacactcagaaaacgaagaattacattgtaatatatgtattaaaacatttataaacaaCGACGCCTTGACTAAACATTTAGAAGATCATAAAATGAACGATTGgaaacatatttgtactgtttgTAATAAAcactttaaaaagaaaaaaagtttAGAATGTCACATGAAAGCTCACGAAGGTGTAAAAGATTTCGAGTGCCCGAAATGCAATAAGTCGTTTGCCGCTagaaaatacttaaataaacatttaaaattgcaTGACACCATTATTCACAATCAGATACACGCAGATAATTCGTCGAAGGATAGTAATTCGACCGTAGAAAACATCGAAGATATTTTTGTTAAAGAAGAATACGACCCAGATAAACccattaataaatttgaaaagactATCATTACTGAACTGACAGGGTTTAAGGACAACAAAATACAGTATCCTGAGTCAGACATGTACCCAAATTTAATACCGCTTACTTCGATTTACAATGAGGAGCACACAGATAGTACCAACCAAGCGATCatagaaaaaatgaatatagaATATATCTCGGAAGGAGAGAGTATTGTATCgggaacaaataataaaaattttgaagacaTTGAACCACCCGTCATAGACAACAACTACAAccaaaattcagaaataaataataaatttgaagagTCTCTCATTACAGACCCGACAGGGTTTAAGGACAACAAAATACAGTATCCTACGTATCCTGAATCGTACCCAAATTTAATACCGCTTACATCGATTTACAATGAGGACCACACAGCTAACACCACCCAAGCGATCgtagaaacaaatataaatgaacttgatgaaaaaattaatatagaatatatctCGGAAGGAGAGAGTATTGTATCgggaacaaataataaaaattttgaagacaTTGAACCATCCGTCGTAGACAACAACTACAACCCAAATTcggaaataagtaataaatttgaaGAGACAATCATTATAGATCCGGCAGGGTTTAAGGACAACAAAATACAGTATCCTGAATCGTACCCAAATTTAATACCGCTTAAATCGATTTACAATGAGGACCACACAGCTAACACCACCCAAGCGATCgtagaaacaaatataaatgaacttgatgaaaaaattaatatagaatatatctCGGAAGGAGAGAGTATTGTATCgggaacaaataataaaaattttgaagacaTTGAACCATCCGTCGTAGACAACAACTACAACCCAAATTcggaaataagtaataaatttgaaGAGACAATCATTATAGATCCGGCAGGGTTTAAGGACAACAAAATACAGTATCCTGAATCGTACCCAAATTTAATACCGCTTAAATCGATTTACAATGAGGACCACACAGCTAGCACCACCCAAGCGATCgtagaaacaaatataaatgaacttgatgaaaaaattaatatagaatatatctCGGAAGAAGAGCGTATTCCATTgggaacaaataataaaaatgttgaagaCTTTATTGAACCACCCGTCGTAAACAACTACAACCCAAATTcggaaataagtaataaatttgaaGAGACAATCATTATAGATCCGGCAGGGTTTAAGGACAACAAAATACAGTATCCTGAATCGTACCCAAATTTAATACCGCTTAAATCGATTTACAATGAGGACCACACAGCTAGCACCACCCAAGCGATCGtagaaacaaatacaaatgaacttgatgaaaaaatgaatacagaataTATCTCGGAAGGAGAGAGTATTGCATCgggaacaaataataaaaatgttgaagaCTGTATTGAACCACCCGTCGTAAACAACTACAACCCAAATTcggaaataagtaataaatttgaaGAGACAATCATTATAGATCCGGCAGGGTTTAAGGACAACAAAATACAGTATCCTGAATCGTACCCAAATTTAATACCGCTTAAATCGATTTACAATGAGGACCACACAGCTAGTACCACCCAAGCGATCGtagaaacaaatacaaatgaacttgatgaaaaaattaatatagaaaatatctcGGAAAAAGAGACTATCATTATAGATCCGACAGGGTTTAAGGACAACAAAATACAGTATCCGACGTATCCTGAGTATGACATGTACCCAAATTTAATACCGCTTACATCGATTTACAATGATAGCACCACCCAATCGATCACAGACACAAATACAAATGAAGAGAACATTACATCGGGAACAAATttcgaagacattactgaacccGTCGTAGACAACAACTACAACCAAAATTCGTTGTTTGATAATATGAGAACACCTTTAAGATACACACAAATCGGAAAAAAATTTCATTGTAACTTATGTAATAAAACGTTTACAGACAAAACCAAACTAATATATCACATAACCACACATATTGGTAAAAAAGAATTTGAGTGTGATATATGCCACCAGTTATTCCTAAATAATAATACCCTACAGTATCATTTAAACACTCATCTTGGTAGTGATGATAACATCTCTAAAGATCATCAATGCAATGAATGTCAAATGTCTTTTAAGTATAAACAAAGTTTGACAAATCATATGATTGCTCATAATGGTATAAAACCATTTGAATGTACAACTTGTTATAAGTCGTTTAGAAAGAAAAGCGACTTGAAAAAACATATAGATCTTCATAAATTGAGCGACCGAGAGTATATTTGCAGTATTTGCACCAGaccttttaaacataaaaaaacttTTGAAAGCCATATGAAAGCTCATCAAGGTATCAAAGATTTTGAATGCCCCAAATGTGATAAGACGTTTTCCCAGAAAAGCTCCAtgttgaaacatttaaaattgcaTTCATTGGATgatcaaacatttatttacagTCAGATGCACTCTTCTGGCAGTGACTCGTTCAAGGACAATAGTTTGACagtagaaaatattgaagataTTTTTGTTAAAGAAGAACATGATCTGTTGGATATAAGTGGTAATAAATTTGAAGAGTCTCTCATTGAAGAACCGAAGAAAGCTACATAG
Protein Sequence
MEDISVKEECEEGYELSEGDVHSAMKIEYEETVLKSDNGFEEILIKEEPDDQIKENNEDEKKRQCPICYKVFSVPGNMIKHVNNTHNGIKKYHCNLCSKSFTEKASLKYHMTIHTGKKQKFECSICSKSYTTKSTLTRHINSHTNDTTQDSASCSNQNKEKSECPVCNKIILRTNLRKHLRNTHGGVKDYHCNICNKSYVEKASLKYHMTSHIGKKEFECDVCHQLFPNNNTLKYHLNTHLNSDDKISKDNQCNECNKTFANKYSLEYHINAHKGIKQFECQICFKSFAHKGVLNKHLIVHKLNDQAHTCTICSKTFKYEKTLESHMKAHEGIKDFECPKCHKLFAVKKYLHVHLKLHSLDDQTVINNQIHVDSTESSNDTFIEDKQCNDELQTKNPQLLALLKTPTPIYNHTDSTNNAETNTNMEAIFVKEEHQLDKNIEHILKSGIQKFGETNIKELMNCADDNISETCNEEKSPKISDEQKRKCPICGKIFAQSRSIGKHIKNKHSGIKNFRCNLCNKAYVDTTGLKYHMATHIGRKEFECNICHQLFPNSNKLKYHLSTHGRGDDEKQENPRCDLCNKSFVNKYGLEYHMNAHKGVKKFKCSICPKQFLHRGALNKHLKIHKLGDKKHTCTICSKTFKHKITLESHMKAHDGIKDFKCPKCHKSFSLKIYLLKHVRMHSSEDQAFIYNQMHANTIDSSKDLRVIEPKKDSEVSNNQTETHPISKDILYPTTLDLFTEKQDEHADYTDDISIDEEVCEIIPSELEEQPEDSHIDCEDNNKLQCPICDKTFSHGSNLSKHLKKHSENEELHCNICIKTFINNDALTKHLEDHKMNDWKHICTVCNKHFKKKKSLECHMKAHEGVKDFECPKCNKSFAARKYLNKHLKLHDTIIHNQIHADNSSKDSNSTVENIEDIFVKEEYDPDKPINKFEKTIITELTGFKDNKIQYPESDMYPNLIPLTSIYNEEHTDSTNQAIIEKMNIEYISEGESIVSGTNNKNFEDIEPPVIDNNYNQNSEINNKFEESLITDPTGFKDNKIQYPTYPESYPNLIPLTSIYNEDHTANTTQAIVETNINELDEKINIEYISEGESIVSGTNNKNFEDIEPSVVDNNYNPNSEISNKFEETIIIDPAGFKDNKIQYPESYPNLIPLKSIYNEDHTANTTQAIVETNINELDEKINIEYISEGESIVSGTNNKNFEDIEPSVVDNNYNPNSEISNKFEETIIIDPAGFKDNKIQYPESYPNLIPLKSIYNEDHTASTTQAIVETNINELDEKINIEYISEEERIPLGTNNKNVEDFIEPPVVNNYNPNSEISNKFEETIIIDPAGFKDNKIQYPESYPNLIPLKSIYNEDHTASTTQAIVETNTNELDEKMNTEYISEGESIASGTNNKNVEDCIEPPVVNNYNPNSEISNKFEETIIIDPAGFKDNKIQYPESYPNLIPLKSIYNEDHTASTTQAIVETNTNELDEKINIENISEKETIIIDPTGFKDNKIQYPTYPEYDMYPNLIPLTSIYNDSTTQSITDTNTNEENITSGTNFEDITEPVVDNNYNQNSLFDNMRTPLRYTQIGKKFHCNLCNKTFTDKTKLIYHITTHIGKKEFECDICHQLFLNNNTLQYHLNTHLGSDDNISKDHQCNECQMSFKYKQSLTNHMIAHNGIKPFECTTCYKSFRKKSDLKKHIDLHKLSDREYICSICTRPFKHKKTFESHMKAHQGIKDFECPKCDKTFSQKSSMLKHLKLHSLDDQTFIYSQMHSSGSDSFKDNSLTVENIEDIFVKEEHDLLDISGNKFEESLIEEPKKAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00769304;
90% Identity
iTF_00769304;
80% Identity
iTF_00769304;