Basic Information

Insect: Harpalus rufipes
Gene Symbol: -
Assembly: GCA_951394225.1
Location: OX596275.1:741787-746513[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2e-05 0.0043 19.3 1.5 1 23 411 433 411 433 0.97

2 18 0.011 2.4 10.6 3.3 1 20 439 458 439 461 0.93

3 18 1.4e-05 0.0031 19.7 0.5 1 23 467 489 467 489 0.99

4 18 2.9e-05 0.0063 18.7 3.5 1 21 495 515 495 517 0.94

5 18 3e-05 0.0066 18.7 4.6 1 23 523 545 523 545 0.99

6 18 2.9e-05 0.0063 18.7 5.3 1 23 551 573 551 573 0.97

7 18 2.3e-05 0.005 19.0 8.1 1 23 579 601 579 601 0.97

8 18 1.1e-07 2.4e-05 26.3 2.7 1 23 607 629 607 629 0.98

9 18 8.2e-05 0.018 17.3 6.7 1 23 635 657 635 657 0.97

10 18 1.4e-05 0.003 19.7 6.9 1 23 663 685 663 685 0.98

11 18 5.3e-07 0.00012 24.2 2.8 1 23 691 713 691 713 0.98

12 18 7.5e-06 0.0016 20.6 7.9 1 23 719 741 719 741 0.98

13 18 3.2e-05 0.007 18.6 9.1 1 23 747 769 747 769 0.98

14 18 1.9e-05 0.0042 19.3 7.7 1 23 775 797 775 797 0.98

15 18 0.0012 0.26 13.7 8.8 1 21 803 823 803 825 0.94

16 18 0.00019 0.041 16.2 0.2 1 23 831 853 831 853 0.97

17 18 0.037 8 9.0 4.5 1 23 863 885 863 885 0.98

18 18 7.9e-07 0.00017 23.6 0.9 1 23 891 913 891 913 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2e-05	0.0043	19.3	1.5	1	23	411	433	411	433	0.97
2	18	0.011	2.4	10.6	3.3	1	20	439	458	439	461	0.93
3	18	1.4e-05	0.0031	19.7	0.5	1	23	467	489	467	489	0.99
4	18	2.9e-05	0.0063	18.7	3.5	1	21	495	515	495	517	0.94
5	18	3e-05	0.0066	18.7	4.6	1	23	523	545	523	545	0.99
6	18	2.9e-05	0.0063	18.7	5.3	1	23	551	573	551	573	0.97
7	18	2.3e-05	0.005	19.0	8.1	1	23	579	601	579	601	0.97
8	18	1.1e-07	2.4e-05	26.3	2.7	1	23	607	629	607	629	0.98
9	18	8.2e-05	0.018	17.3	6.7	1	23	635	657	635	657	0.97
10	18	1.4e-05	0.003	19.7	6.9	1	23	663	685	663	685	0.98
11	18	5.3e-07	0.00012	24.2	2.8	1	23	691	713	691	713	0.98
12	18	7.5e-06	0.0016	20.6	7.9	1	23	719	741	719	741	0.98
13	18	3.2e-05	0.007	18.6	9.1	1	23	747	769	747	769	0.98
14	18	1.9e-05	0.0042	19.3	7.7	1	23	775	797	775	797	0.98
15	18	0.0012	0.26	13.7	8.8	1	21	803	823	803	825	0.94
16	18	0.00019	0.041	16.2	0.2	1	23	831	853	831	853	0.97
17	18	0.037	8	9.0	4.5	1	23	863	885	863	885	0.98
18	18	7.9e-07	0.00017	23.6	0.9	1	23	891	913	891	913	0.96

Sequence Information

Coding Sequence: atgaattCTGGTGACCAGCATAATCTAGCCTCAACggctggggctccaaatcagcCCGGCGGCTCAAACGACGATGGAAGTCGGGGAGGTGGAGGACCGAACCAAGGGGGCGTGCAACCGACGACAACGGTCCCCACGGATCTGCGGGTCAACACTACGGCCCTCAATGCAGTCGCGCTGAGTAGTGTGGCTAAATATTGGGTTTTAACAAATCTTCTACCCGGACCGATACCACAGGTGTCTGTCTATGGGTTACCCGGAGCTGCACAGGGCTCCACGGGTCGAAATGATAACACGAAACCCACGCAGGAGGGTTTATTAGCACAACACGGCGGTTTACTACCCACAGACCCAATGTTGTTACAACAACATTCCCAAATACCAGTATCCATTTCTACACCACAAGGAGTCGCAAATATATCCATCCCAATGCAGGGCAGATCATCCCAACAACCTGAACAACTAAACCACCAACAACAACAACCCCAACAACCCTTACAACAACCCCTTGTACAAGTCCAAGTCCAGGACAACATGGTTTCTGTTATTGATGATTCAAAAGATCAAATTCAAAAATCAGATTTGATACAACAATGTAATCAAGGAGATTTACAACAATTGCCCCAAGaacaacaacaaaatttaaCTGTACAACAGTTACAACACTTGCAAGTACAACAAGTTATTGACAATGTTGTAAGAATGGAAAGTGATAACAATCAAGACAACAATCAAAATGAATCAATCAACAATGATTTACAAATTGTTAAAGACGAAAAAGGAATTCAAAATTGCGCCAAGTTATTATCATCGGCGCAATTTGGCTTGCAAGATATAAAAGGAAATTTTTCCATGCCTGACATAAAATCTGGACATCATATGATGGATGTACGAACCGCGGATGGATCCATTGTTAAAATATCCGCCGGTATACAAGAACAAGATTTGGCGAAAACTTTGGGCGTAGAAATggttcaaaatatgtataaagtcAACGTAGACGACATAAATCAGTTGTTAGCATACCACGAAGTTTTTGGCAAACTTCAAAACGAAATGGTTACTGGAAACGCACAAAATATTCCAAATAATTCTACAGCACAAACATCTACAGGATCTGTTGTTACtaatacaaacataaatatgaacaaatCGTTAGAAAGTGACCAAGAACCGTCCACATCTTCAATATCGGCGGATAGTCCCCCGGCAGTCATAGCCGCCGGAACTCATGTTTGTGATTTATGCGGGAAAATGTTTCCATTTCGTTATCAACTAATCGTTCACCGACGATACCACACTGAAAGAAAACCATTTACGTGTCAAGTGTGCGGAAAAGCGTTTACATGTGCCGCAGAACTAACCAGACACGGCAAATGCCACCTTGGAGGGTCTATGTATACATGTGCAGTTTGTTTTCATGTCTTCGCCGATGCAGCAAGCTTAGAACGACACATGAAACGCCATTCTACCGACAAACCATACGCCTGCAACATCTGCGGTAAATCATTCGCCCGGAAGGAACATTTAGACAACCATACTCGTTGTCACACCGGCGAAACACCATACAGATGTCAATATTGCGCGAAAACATTCACCAGAAAAGAACATATGGTTAATCATGTCCGTAAACACACCGGCGAGACCCCTCATCGTtgcgaaatttgtaaaaaaagtttTACAAGAAAAGAACATTTCATGAACCATGTGATGTGGCACACCGGCGAAACGCCTCACCACTGCACCACTTGTGGTAAAAAATATACCAGGAAAGAACATCTGGCTAACCATATGAGATCCCATACGAATGATACACCATTTAGGTGTGAAATATGCGGTAAAAGTTTCACCAGAAAAGAACATTTCACGAACCATATTATGTGGCATACTGGCGAAACACCTCACAGATGCGATTTTTGTTCGAAAACATTCACCCGTAAAGAACATTTATTGAATCATGTTCGTCAACACACCGGGGAATCCCCCCATAGATGCACATTTTGTTCGAAATCATTCACGAGAAAAGAACATCTGATTAATCATATTCGTCAACACACCGGCGAAACACCTTTTAGGTGTAGTTATTGCCCGAAAGCTTTCACCAGAAAAGATCATCTGGTTAATCATGTTCGTCAACACACCGGGGAATCCCCCCATAAATGCACATACTGCACTAAATCATTCACCAGAAAGGAACATCTTACAAATCATGTTCGGCAACATACTGGGGAATCCCCTCACAGATGCCATTTCTGTTCTAAATCATTCACACGGAAAGAACATCTGACAAATCATGTTAGAATACACACCGGGGAATCCCCGCATAGGTGTGAATTCTGCCAAAAAACATTTACAAGAAAAGAACATTTGACGAATCATTTGCGTCAACATACCGGCGAGACTCCCCATTGTTGTAACGTATGTTCAAAACCATTTACCCGGAAAGAACATCTTATTAACCATATGAGGTGTCACACAGGCGAGCGCCCTTTTGCCTGTGGTGAATGCGGTAAATCATTTCCCTTAAAAGGAAATTTATTATTCCATCAACGATCGCACAATAAAGGATCTAATGCTGAACGTCCATTCCGTTGCGATTTATGCCCGAAAGATTTCATGTGTAAAGGTCATCTGGTGTCTCACCGTCGCTCGCACAGCGGGGAACGACCGCATGCTTGTCCAGATTGCGGGAAAACTTTCGTTGAAAAAGGCAACATGTTGAGGCATCTTCGTAAACATACTAATGAAGCCGGGGCGACGGCAACAACTGGACAAgtgcaacaacaacaacaagcaACAACAACTGCTAATATTCAGATACCGGCGATGAGTGCGCCTGCGCCCCAAGGGGTACAACAAACAACTATGCAACCCCCGGTGCCCCAGTTGTATCAACAGCCGACTCATGCGGGCACGCCCCATCCGGGGAATGTTTTAGCCAGCTATTAA
Protein Sequence: MNSGDQHNLASTAGAPNQPGGSNDDGSRGGGGPNQGGVQPTTTVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGAAQGSTGRNDNTKPTQEGLLAQHGGLLPTDPMLLQQHSQIPVSISTPQGVANISIPMQGRSSQQPEQLNHQQQQPQQPLQQPLVQVQVQDNMVSVIDDSKDQIQKSDLIQQCNQGDLQQLPQEQQQNLTVQQLQHLQVQQVIDNVVRMESDNNQDNNQNESINNDLQIVKDEKGIQNCAKLLSSAQFGLQDIKGNFSMPDIKSGHHMMDVRTADGSIVKISAGIQEQDLAKTLGVEMVQNMYKVNVDDINQLLAYHEVFGKLQNEMVTGNAQNIPNNSTAQTSTGSVVTNTNINMNKSLESDQEPSTSSISADSPPAVIAAGTHVCDLCGKMFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCAVCFHVFADAASLERHMKRHSTDKPYACNICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTTCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTFCSKSFTRKEHLINHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFACGECGKSFPLKGNLLFHQRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHTNEAGATATTGQVQQQQQATTTANIQIPAMSAPAPQGVQQTTMQPPVPQLYQQPTHAGTPHPGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00903477;
90% Identity: iTF_01104929; iTF_00767417;
80% Identity: -