Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720451.1:58280521-58290403[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.3e-05 0.0058 19.3 1.5 1 23 413 435 413 435 0.97

2 18 0.013 3.3 10.6 3.3 1 20 441 460 441 463 0.93

3 18 1.6e-05 0.0042 19.7 0.5 1 23 469 491 469 491 0.99

4 18 3.4e-05 0.0086 18.7 3.5 1 21 497 517 497 519 0.94

5 18 3.5e-05 0.0089 18.7 4.6 1 23 525 547 525 547 0.99

6 18 3.4e-05 0.0085 18.7 5.3 1 23 553 575 553 575 0.97

7 18 2.7e-05 0.0069 19.0 8.1 1 23 581 603 581 603 0.97

8 18 1.3e-07 3.3e-05 26.3 2.7 1 23 609 631 609 631 0.98

9 18 9.7e-05 0.025 17.3 6.7 1 23 637 659 637 659 0.97

10 18 1.6e-05 0.0041 19.7 6.9 1 23 665 687 665 687 0.98

11 18 6.2e-07 0.00016 24.2 2.8 1 23 693 715 693 715 0.98

12 18 8.8e-06 0.0022 20.6 7.9 1 23 721 743 721 743 0.98

13 18 3.7e-05 0.0095 18.6 9.1 1 23 749 771 749 771 0.98

14 18 2.3e-05 0.0057 19.3 7.7 1 23 777 799 777 799 0.98

15 18 0.0014 0.35 13.7 8.8 1 21 805 825 805 827 0.94

16 18 0.00022 0.056 16.2 0.2 1 23 833 855 833 855 0.97

17 18 0.043 11 9.0 4.5 1 23 865 887 865 887 0.98

18 18 9.3e-07 0.00024 23.6 0.9 1 23 893 915 893 915 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.3e-05	0.0058	19.3	1.5	1	23	413	435	413	435	0.97
2	18	0.013	3.3	10.6	3.3	1	20	441	460	441	463	0.93
3	18	1.6e-05	0.0042	19.7	0.5	1	23	469	491	469	491	0.99
4	18	3.4e-05	0.0086	18.7	3.5	1	21	497	517	497	519	0.94
5	18	3.5e-05	0.0089	18.7	4.6	1	23	525	547	525	547	0.99
6	18	3.4e-05	0.0085	18.7	5.3	1	23	553	575	553	575	0.97
7	18	2.7e-05	0.0069	19.0	8.1	1	23	581	603	581	603	0.97
8	18	1.3e-07	3.3e-05	26.3	2.7	1	23	609	631	609	631	0.98
9	18	9.7e-05	0.025	17.3	6.7	1	23	637	659	637	659	0.97
10	18	1.6e-05	0.0041	19.7	6.9	1	23	665	687	665	687	0.98
11	18	6.2e-07	0.00016	24.2	2.8	1	23	693	715	693	715	0.98
12	18	8.8e-06	0.0022	20.6	7.9	1	23	721	743	721	743	0.98
13	18	3.7e-05	0.0095	18.6	9.1	1	23	749	771	749	771	0.98
14	18	2.3e-05	0.0057	19.3	7.7	1	23	777	799	777	799	0.98
15	18	0.0014	0.35	13.7	8.8	1	21	805	825	805	827	0.94
16	18	0.00022	0.056	16.2	0.2	1	23	833	855	833	855	0.97
17	18	0.043	11	9.0	4.5	1	23	865	887	865	887	0.98
18	18	9.3e-07	0.00024	23.6	0.9	1	23	893	915	893	915	0.96

Sequence Information

Coding Sequence: atgaattCTGGTGACCAGCATAGTTTAGCCTCAACGGCTGGGGCACAAAATCAGCCCGGTGCCTCTAACGACGATGGAAGCCGAGGAGGTGGAGGACCGAACCAAGGCCAAGGAGGCGTACAACCAACGACAACGGTCCCGACGGATCTGCGGGTCAACACTACAGCTCTCAATGCTGTGGCGTTGAGTAGTGTGGCTAAATATTGGGTTCTAACGAACCTTCTGCCCGGACCTATACCGCAGGTGTCTGTCTATGGATTACCCGGAGCTACACAAGGTACCACGGGACGAAATGACAACACAAAACCCACACagGAGGGTTTACTCGCACAACACGGTGGTTTACTCCCCACAGACCCAATGTTGTTGCAACAACATTCACAAATACCAGTATCCATTTCCACGCCTCAAGGAGTCGCCAATATTTCAATTCCAATGCAGGGGCGAAGCTCCCAACAACCAGAACAACTAAACCATCAACAACAACAAACTCAACAACCTTTACAACAACCCCTTGTACAAGTCCAAGTTCAAGACAACATGGTTTCAGTTATTGACGACTCAAAAGATCAAATTCAAAAATCAGATTTGATACAACAATGTAATCAGGGAGATTTACAACAATTACCCCAAGAACAACAACAGAATTTAACGGTACAACAATTACAACATTTGCAAGTACAACAAGTTATTGATAATGTTGTTAGAATGGAAAGTGATAACAACCAAGACAacaatcaaaatgaaactattaacaatgatttacaaattgttaaagatgaaaaaggaattcaaaattgtgcaaaattattatcatcagCTCAGTTTGGCTTGCAAGACATAAAAGGCAATTTTTCAATGCCTGACATAAAATCTGGACATCATATGATGGACGTACGAACTGCCGACGGGTCTATTGTTAAAATATCTGCTGGAATTCAAGAACAAGATTTGGCAAAAACTTTAGGCGTTGAAATGGTACAGAATATGTATAAAGTCAACGTAGACGACATAAATCAATTGTTAGCATACCACGAAGTTTTTGGTAAACTACAAAACGAAATGGTTACAGGAAATGCACAAAATCTTCCAAATAATTCCACAGCCCAAACATCTACAGGGTCTGTTGTAACTAATACAAACATAAACATGAACAAATCGTTAGAAAGTGACCAAGAACCATCAACTTCATCAATATCTGCAGACAGTCCCCCAGCTGTAATCGCGGCTGGAACTCATGTCTGTGATTTGTGCGGAAAAATGTTCCCGTTTCGATATCAATTAATTGTTCACAGAAGATATCACACGGAACGAAAAccatttacctgtcaagtatgtGGGAAAGCGTTTACATGCGCTGCGGAACTTACCAGGCATGGAAAATGCCATCTAGGGGGGTCTATGTACACTTGCGCAGTTTGTTTTCATGTTTTTGCTGATGCAGCGAGTTTGGAACGACACATGAAGCGGCATTCTACCGATAAACCATACGCTTGTAACATCTGTGGGAAATCATTCGCAAGAAAAGAACATTTGGACAATCATACTCGATGTCATACTGGGGAAACACCATACAgatGTCAGTATTGTGCAAAAACGTTCACCAGAAAAGAACACATGGTTAACCATGTCCGTAAACATACTGGTGAAACACCACATCGTTGCGAAATTTGTAAAAAGAGTTTTACAAGAAAAGAACATTTCATGAACCATGTTATGTGGCACACTGGTGAAACACCGCACCATTGCACCACTTGTGGTAAGAAATATACCAGAAAAGAACATTTGGCGAACCACATGAGATCTCATACGAATGACACACCATTCAGATGCGAAATATGCGGTAAAAGTTTCACCAGAAAAGAACATTTTACGAATCATATAATGTGGCACACTGGTGAAACACCCCACAGATGTGATTTTTGTTCGAAAACTTTCACCAGGAAAGAACATTTGTTGAATCATGTTCGCCAACATACCGGGGAATCCCCACATAGATGCACATTTTGTTCAAAGTCTTTCACTAGAAAAGAACATCTTATTAATCATATTCGACAACATACTGGTGAAACACCGTTTAGGTGTAGTTATTGCCCTAAAGCGTTCACCAGAAAAGATCACCTGGTGAATCATGTTCGCCAACATACCGGGGAATCCCCGCATAAATGCACATACTGCACTAAATCTTTTACTAGAAAAGAACATCTGACAAATCATGTTCGACAACACACAGGGGAATCCCCGCATAGATGCCATTTTTGTTCTAAAAGTTTTACAAGAAAAGAACACCTTACAAATCATGTTAGAATACACACAGGGGAATCCCCGCATAGGTGTGAATTCTGTCAAAAAACTTTCACAAGAAAAGAACATTTGACAAATCATTTAAGACAACACACAGGCGAAACTCCGCATTGTTGTAATGTATGTTCGAAACCTTTCACCAGAAAAGAACATCTTATAAACCACATGAGATGTCACACTGGCGAACGCCCTTTTGCTTGTGGTGAATGCGGAAAATCCTTCCCATTAAAAGGCAATCTATTATTCCACCAGCGATCCCATAACAAAGGCTCAAACGCCGAGCGTCCATTCCGTTGTGACTTATGCCCAAAAGACTTCATGTGCAAAGGTCATTTAGTGTCCCACCGTCGCTCGCACAGTGGTGAACGCCCCCACGCTTGTCCCGACTGCGGGAAAACTTTCGTCGAGAAAGGAAACATGTTGAGGCATCTTCGGAAACATACTAATGAAGCAGGGGCGCCGACAGCGACTGGGCAAGTGgggcaacagcaacagcaagcGACAACAACGGCGAATAATATTCAGATTCCGGCGATGAGCGCGCCTGCGCCTCAAGGGGTGCAGCAGGGGACCATGCAGCCCCCTGTGCCGCAGTTGTATCAACAACCCACGCATGCGGGCACGCCGCATCCTGGAAATGTTTTAGCCAGCTactaa
Protein Sequence: MNSGDQHSLASTAGAQNQPGASNDDGSRGGGGPNQGQGGVQPTTTVPTDLRVNTTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGATQGTTGRNDNTKPTQEGLLAQHGGLLPTDPMLLQQHSQIPVSISTPQGVANISIPMQGRSSQQPEQLNHQQQQTQQPLQQPLVQVQVQDNMVSVIDDSKDQIQKSDLIQQCNQGDLQQLPQEQQQNLTVQQLQHLQVQQVIDNVVRMESDNNQDNNQNETINNDLQIVKDEKGIQNCAKLLSSAQFGLQDIKGNFSMPDIKSGHHMMDVRTADGSIVKISAGIQEQDLAKTLGVEMVQNMYKVNVDDINQLLAYHEVFGKLQNEMVTGNAQNLPNNSTAQTSTGSVVTNTNINMNKSLESDQEPSTSSISADSPPAVIAAGTHVCDLCGKMFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCAVCFHVFADAASLERHMKRHSTDKPYACNICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTTCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTFCSKSFTRKEHLINHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFACGECGKSFPLKGNLLFHQRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHTNEAGAPTATGQVGQQQQQATTTANNIQIPAMSAPAPQGVQQGTMQPPVPQLYQQPTHAGTPHPGNVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00903477;
90% Identity: iTF_00769004;
80% Identity: -