Hruf016457.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- -
- Assembly
- GCA_951394225.1
- Location
- OX596277.1:41264309-41266711[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 9.2e-06 0.002 20.3 4.2 1 23 132 154 132 154 0.98 2 23 0.00091 0.2 14.0 3.4 1 23 161 183 161 183 0.98 3 23 1.1e-05 0.0024 20.0 2.2 1 23 190 212 190 212 0.97 4 23 0.00035 0.075 15.3 6.5 1 23 217 239 217 239 0.96 5 23 0.031 6.7 9.2 8.3 1 23 245 267 245 267 0.98 6 23 0.0003 0.066 15.5 2.1 1 23 273 295 273 295 0.99 7 23 7.4e-06 0.0016 20.6 4.3 1 23 301 323 301 323 0.98 8 23 0.00033 0.072 15.4 0.2 2 23 330 351 329 351 0.97 9 23 6.8e-05 0.015 17.6 2.8 1 23 357 379 357 379 0.98 10 23 1.3e-05 0.0029 19.8 5.7 1 23 385 407 385 407 0.98 11 23 0.00013 0.028 16.7 0.5 2 23 414 435 413 435 0.95 12 23 0.00053 0.11 14.8 2.2 1 20 440 459 440 462 0.94 13 23 7e-05 0.015 17.5 0.2 2 23 468 490 467 490 0.96 14 23 0.00043 0.093 15.1 1.5 1 23 510 533 510 533 0.94 15 23 1.7e-05 0.0038 19.4 0.3 2 23 541 562 540 562 0.97 16 23 9e-05 0.02 17.2 4.4 1 23 568 590 568 590 0.96 17 23 7.3e-05 0.016 17.5 0.2 1 23 596 619 596 619 0.98 18 23 2.9e-07 6.3e-05 25.0 0.8 1 23 627 649 627 649 0.98 19 23 0.056 12 8.4 1.2 1 23 655 678 655 678 0.96 20 23 1.5e-06 0.00033 22.8 0.2 1 23 684 706 684 706 0.96 21 23 5.3e-06 0.0011 21.1 5.8 1 23 712 734 712 734 0.98 22 23 3e-05 0.0066 18.7 1.6 2 23 740 761 740 761 0.97 23 23 8.2e-05 0.018 17.3 1.0 3 23 768 788 766 788 0.97
Sequence Information
- Coding Sequence
- ATGGAAACAAACAATACTTTTCTGGATCTTGATATAAAGAAAGAATATGATGCAGAGGAAGAAAGTGAAATGGATCAGTCCCCTTGTAGCTATATCGACGACGAACAAAGCTCTAATGAAATGGCTGAATCTGAAAATGACTTACATGATATGCCCATTAAGCATGAACCAAATGATACACATGATTATTCATTTGACATGGATCCTGAAAATGAGAATgtaaaaactttaaatgtagATATTATGTCATTTTTAGCTGTAACACTAGACGAAGGAGATGCTAGTAATAAATGTCAAGACATAGATACCTCACTAGAAATCAAAGCTGAAGATGTTTCTGATGAAATTGATATTTTACAAACTTCTCTTGTTGAAGATCCATTTTTAAAACGATTTCCTTGTACGGTATGTAAAAGAAGTTACAGATTTAGAAGTAGTTTGATACATCACATGAGAAGACATCCAATTAGAAAACAGTATTTTGAATGCAGCacctgtcaaaaaaagtttgcaAAAGTTCATAATTATATACAACATTTAAGCACGCATGATGGAGACATTCACATATTTCATTGCCCGTACTGCGATAAAAATTTTCCTTCTTCGAAAACCCTAAAGGTTCATGTACAAAATCATGTTAAGAAAACCTTTTCTTGTAAATATTGCAAGAAGGAATTTTTTCGAAAAACTCATTTGGAACGACATGAATATAGCCATACCGGCGAAAAACCGTACAAATGTAAAGAATGCAAGAAATGTTTTACTTGTAGTGAATACCTATTAGAACACAATAAGACTCACATAAAAACCAAGCCATATACATGTCTCACTTGCCATAGAAAATTTGCCAACCCTTCTATTTTATCTGAACATATGCGTCGACATACAGGCGAACGGCCTTTTCAATGCAAAACTTGTGAAAAATCATTTCACAGTAGATCAGatttaaataaacatgaaaGGATTCATACTGGAGAAAGAAATGTTCCTTGTCCCAGTtgtaaaagattattttatactgaCTCTCAACTTGCAGTTCATATGAAAACCCATTCAGACGACAAAAAGTTTATTTGCACGACGTGTAAccgaaaatttgattttttatcaCAATTATCTCGCCATACTCGCATGCATACAGGCGAACGACCATTTCACTGTAAAGTTTGTGGGAAGGATTTTATGAGTTCATCTCATCTATATCGTCACCTAAGATCCCATTCATTTAAACCGAATCTAATTTGTGATATATGTAACAGGACTTTTAAACGAGTTGCATTTTTGGAGAGACATCGCGATTCACATTTGAATGATAAATTTCCTTGCGATGATTGTGGTAGTACGTTCAAGAAATTATCAGAATTAGAACGTCATAAAGAATGCCATGCAGAAGACATGTTACCATGTacaatttgtaaacaaatttttaaaagtgaattaaatttaaaagaacataTAAGGAGTGCCCATGATGAAAAACAATTTGACTTATCACAATATTATACTCGTCAAGAAGGAAAGAAATCTTTTGCATGTAATCTTTGTGATAGATCATATCAAACAAGATCAAAATTTGAAcgacattatttaaatatccatGGAGAGGCCCCAAGAACTCTTCCATGTCCAATATGCTCAAAATTATTTCGGAATACGACAGAATTAAAAGCACATATTAAAAGGCATGCAAAAATAAAACCCCACTGTTGTGAACTTTGCGAGAGAAGTTTTTCCTCCAAAGCTCAACTTGTAAGGCATACGAGGCTTCATATGGGTGATAGGCCTTTTAAATGTGATAGTTGCCCGAAAGCTTTTGCTTTAGAAACTGAATTAACTAGGCATGTACGCATTCGACATATGGGAGCAGAATTCAGGAATTTTCCTTGCACATTATGTGATAAAAGGTTTTCAACTAGAGCCCAAGTAGAGCGACATATTCGAACACATACTGGGGAACGGCCTTTTGATTGTGAATTctgtgaattaaaatttaaaggtCTATATGAAAAGCAGAGGCATGTAAAGAAAATTCACATGAATGATCGACCATTTGAATGCCAAGATTGTGATAAAAGTTTTGTTAGTAACGCGGAATTAAATCGTCATTCGATTATACATTCTGGCATTAGGGCACACCAGTGTCCAGAATGCCATAAGTCTTTCTTCAATCAAAATGAACTTCGGCGGCATGTGAAAAGGCATGCTGCTTATACAAATGTTTGCCATATTTGCGCTAAAAGTTTCAGTACAACTGAATTATTAAATCGACATCTCGAAAGACATAATTATAGTCGTGTAATCTGtgaaatttgtaacaaaatttgtGCATCTAAAATTCATTTAGCGAAGCATATGCTTATTCATAGTACGAGTAGTGATGGATCTGGTACTTCTtataattaa
- Protein Sequence
- METNNTFLDLDIKKEYDAEEESEMDQSPCSYIDDEQSSNEMAESENDLHDMPIKHEPNDTHDYSFDMDPENENVKTLNVDIMSFLAVTLDEGDASNKCQDIDTSLEIKAEDVSDEIDILQTSLVEDPFLKRFPCTVCKRSYRFRSSLIHHMRRHPIRKQYFECSTCQKKFAKVHNYIQHLSTHDGDIHIFHCPYCDKNFPSSKTLKVHVQNHVKKTFSCKYCKKEFFRKTHLERHEYSHTGEKPYKCKECKKCFTCSEYLLEHNKTHIKTKPYTCLTCHRKFANPSILSEHMRRHTGERPFQCKTCEKSFHSRSDLNKHERIHTGERNVPCPSCKRLFYTDSQLAVHMKTHSDDKKFICTTCNRKFDFLSQLSRHTRMHTGERPFHCKVCGKDFMSSSHLYRHLRSHSFKPNLICDICNRTFKRVAFLERHRDSHLNDKFPCDDCGSTFKKLSELERHKECHAEDMLPCTICKQIFKSELNLKEHIRSAHDEKQFDLSQYYTRQEGKKSFACNLCDRSYQTRSKFERHYLNIHGEAPRTLPCPICSKLFRNTTELKAHIKRHAKIKPHCCELCERSFSSKAQLVRHTRLHMGDRPFKCDSCPKAFALETELTRHVRIRHMGAEFRNFPCTLCDKRFSTRAQVERHIRTHTGERPFDCEFCELKFKGLYEKQRHVKKIHMNDRPFECQDCDKSFVSNAELNRHSIIHSGIRAHQCPECHKSFFNQNELRRHVKRHAAYTNVCHICAKSFSTTELLNRHLERHNYSRVICEICNKICASKIHLAKHMLIHSTSSDGSGTSYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767412;
- 90% Identity
- iTF_01104925;
- 80% Identity
- -