Hrub025307.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720452.1:22705543-22707948[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 6.1e-06 0.0015 21.1 4.2 1 23 133 155 133 155 0.98 2 23 0.00024 0.061 16.1 2.6 1 23 162 184 162 184 0.98 3 23 4.9e-06 0.0013 21.4 3.0 1 23 191 213 191 213 0.97 4 23 0.0004 0.1 15.3 6.5 1 23 218 240 218 240 0.96 5 23 0.036 9.2 9.2 8.3 1 23 246 268 246 268 0.98 6 23 0.0007 0.18 14.6 3.1 1 23 274 296 274 296 0.99 7 23 8.7e-06 0.0022 20.6 4.3 1 23 302 324 302 324 0.98 8 23 0.00036 0.091 15.5 0.2 2 23 331 352 330 352 0.97 9 23 8e-05 0.02 17.6 2.8 1 23 358 380 358 380 0.98 10 23 1.5e-05 0.0039 19.8 5.7 1 23 386 408 386 408 0.98 11 23 9.8e-05 0.025 17.3 0.8 2 23 415 436 414 436 0.96 12 23 0.0046 1.2 12.0 3.4 1 20 441 460 441 463 0.94 13 23 0.00018 0.046 16.4 0.2 2 23 469 491 468 491 0.96 14 23 0.0005 0.13 15.1 1.5 1 23 511 534 511 534 0.94 15 23 2e-05 0.0051 19.4 0.3 2 23 542 563 541 563 0.97 16 23 0.00013 0.033 16.9 4.6 1 23 569 591 569 591 0.96 17 23 8.5e-05 0.022 17.5 0.2 1 23 597 620 597 620 0.98 18 23 1.4e-06 0.00035 23.1 1.2 1 23 628 650 628 650 0.98 19 23 0.066 17 8.4 1.2 1 23 656 679 656 679 0.96 20 23 1.8e-06 0.00044 22.8 0.2 1 23 685 707 685 707 0.96 21 23 6.2e-06 0.0016 21.1 5.8 1 23 713 735 713 735 0.98 22 23 3.6e-05 0.009 18.7 1.6 2 23 741 762 741 762 0.97 23 23 9.6e-05 0.024 17.3 1.0 3 23 769 789 767 789 0.97
Sequence Information
- Coding Sequence
- ATGGAAACAAACAATACACTTCTGGATCTTACCATAAAGAAAGAATATGATGAAGATGAAGAAAGTGAATTGGATCAGTCTCCTTGTAGTTATATCGAGGACGAACAAAGTTCTAATGAAATGGCTGAATCTGAAAATGACTTACATGCTATGCCCGTTAAGCATGAACTAAATGACACTCAGGATTATTCATTTGACATGGATCCTGAAAATGAGAACgatgtaaaaactttaaatGTAGATATCATGTCATTTTTAGCTGTAACATTAGACGAAGGAGATGCTACTAATAAATGTCAAGACATAGATACCTCATTAGAAATCAAAGCTGAAGATGTTTCTGATGAAATTGATATTTTACAAACTTCCCTTGTTGAAGATCCATTTTTAAAACGATTTCCTTGCACGATATGTAAAAGAAGTTACAGATTTAGAAGTAGTTTGATACATCACATGAGAAGACATCCAATTAGAAAACAGTATTTTGAATGCAGCATCTGTCAAAAAAAGTTTGCCAAAGTTCATAATTATATTCAACATCTAAGCACACATGATGGAGACATTCACATATTTCATTGTCCGTACTGCGATAAAAATTTCTCTTCTTCGAAAAGTCTAAAGGTTCATGTACAAAACCATGTTAAGAAAACCTTTTCTTGTAAATATTGCAAGAAGGAATTTTTTCGAAAAACTCATTTGGAACGACATGAATATAGCCATACCGGCGAAAAACCGTACAAATGTAAAGAATGCAAAAAATGTTTTACTTGTAGTGAATACCTATTAGAACACAATAAGACTCACATAAAGACCAAGCCATATACATGTCTTACTTGCCATAGAAAATTTGCCAACTCTTCTATATTATCTGAACACATGCGTCGACATAACGGCGAACGGCCTTTTCAGTGCAAAACTTGCGAAAAATCATTTCACAGTAGATCAGatttaaataaacatgaaaGGATTCATACTGGAGAAAGAAATATACCCTGCCCCAGTTGCAAAAGATTATTTTACACAGATTCTCAACTTGCTGTTCATATGAAAACCCATTCTGACGACAAAAAGTTTATTTGTACAACTTGTAAccgaaaatttgattttttatcaCAATTATCCCGCCATACTCGCATGCATACTGGCGAACGACCGTTTCACTGTAAAGTTTGTGGGAAGGACTTTATGAGTTCATCTCATCTGTATCGTCACCTAAGATCGCATTCATTTAAACCAAATCTAACTTGTGATATATGTAACAGGACTTTCAAACGAGTTGCATTTTTGGAGAGACATCGCGACTCACATTTGAATGATAAATTTCCTTGCGATGAATGTGGCAGTACTTTCAAGAAATTATCCGAATTAGAACATCATAAAGAATGCCATGCAGAAGACATGTTACCATGTACAAtatgtaaacaaatatttaaaagtgagttaaatttaaaagaacatATAAAGAGTGCCCATGATGAAAATCAATTTGATTTGACTCAATATTATACTCGTCAAGAAGGAAAGAAATCATTTGCATGTAATCTTTGTGATAGATCATATCAAACAAGATCAAAATTTGAAcgacattatttaaatatccaTGGAGAAGCCCCAAGAACTCTTCCTTGCCCAATATGCTCAAAATTATTTCGGAATACAACAGAATTAAAAGCACATATTAAAAGGCATGCAAAGATAAAACCCCACTGTTGTGAACTTTGCGAGCGAACTTTTTCCTCTAAAGCTCAGCTTGTAAGGCATACGAGGCTTCATATGGGAGATAGGCCATTTAAATGTGATAGTTGCCCGAAAGCCTTTGCTTTAGAAACCGAATTAACTAGGCATGTACGTATTCGGCATATGGGAGCAGAGTTCAGGAATTTTCCTTGCACATTATGTGATAAGAGGTTTTCAACTAGAGCCCAAGTAGAGCGACATACTCGAACACATACTGGCGAACGGCCTTTCGATTGTGAATTCtgtgaattaaaatttaaaggtCTGTATGAAAAGCAAAGGCATGTAAAGAAAATTCATATGAATGATCGACCATTTGAATGCCAAGATTgtgataaaagttttgtaagtAATGCGGAATTAAATCGTCATTCAATTATACATTCTGGCATTAGGGCGCACCAGTGTCCAGAATGCCACAAGTCCTTCTTCAATCAAAATGAACTTAGGCGGCATGTAAAAAGGCATGCTGCTTATACAAATGTTTGTCATATTTGCGCTAAAAGTTTCAGTACAACTGAATTATTAAATCGGCATCTCGAAAGACATAACTATAGTCGTGTAATCTGtgaaatttgtaacaaaatttgtGCATCTAAAATTCATTTAGCGAAACATATGCTTATTCATAGTTCGAGTAGTGATGGATCTGGTACTTCTtacaattaa
- Protein Sequence
- METNNTLLDLTIKKEYDEDEESELDQSPCSYIEDEQSSNEMAESENDLHAMPVKHELNDTQDYSFDMDPENENDVKTLNVDIMSFLAVTLDEGDATNKCQDIDTSLEIKAEDVSDEIDILQTSLVEDPFLKRFPCTICKRSYRFRSSLIHHMRRHPIRKQYFECSICQKKFAKVHNYIQHLSTHDGDIHIFHCPYCDKNFSSSKSLKVHVQNHVKKTFSCKYCKKEFFRKTHLERHEYSHTGEKPYKCKECKKCFTCSEYLLEHNKTHIKTKPYTCLTCHRKFANSSILSEHMRRHNGERPFQCKTCEKSFHSRSDLNKHERIHTGERNIPCPSCKRLFYTDSQLAVHMKTHSDDKKFICTTCNRKFDFLSQLSRHTRMHTGERPFHCKVCGKDFMSSSHLYRHLRSHSFKPNLTCDICNRTFKRVAFLERHRDSHLNDKFPCDECGSTFKKLSELEHHKECHAEDMLPCTICKQIFKSELNLKEHIKSAHDENQFDLTQYYTRQEGKKSFACNLCDRSYQTRSKFERHYLNIHGEAPRTLPCPICSKLFRNTTELKAHIKRHAKIKPHCCELCERTFSSKAQLVRHTRLHMGDRPFKCDSCPKAFALETELTRHVRIRHMGAEFRNFPCTLCDKRFSTRAQVERHTRTHTGERPFDCEFCELKFKGLYEKQRHVKKIHMNDRPFECQDCDKSFVSNAELNRHSIIHSGIRAHQCPECHKSFFNQNELRRHVKRHAAYTNVCHICAKSFSTTELLNRHLERHNYSRVICEICNKICASKIHLAKHMLIHSSSSDGSGTSYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768999; iTF_01104925;
- 90% Identity
- iTF_01104925;
- 80% Identity
- -