Hruf036768.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- Hr39
- Assembly
- GCA_951394225.1
- Location
- OX596282.1:47257980-47275962[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.18 3e+03 -0.8 5.1 45 145 160 269 109 304 0.69 2 4 1.1e-08 0.00018 22.9 0.0 1 27 373 399 373 435 0.76 3 4 0.013 2.2e+02 2.9 0.1 91 145 439 480 416 506 0.69 4 4 9.5e-74 1.6e-69 237.2 0.1 204 408 507 706 496 706 0.97
Sequence Information
- Coding Sequence
- ATGTCGGAGATGCGGTCGCCGAACGTGTCGGTGACGGCGCTGAATGTGGAGGCGTTCCCGGGGTCAGCCGCCGACCTGGGGCAGCGCGCCGAGCACCAGGACAGCGGCGAGGACGCAGAAGTCGCGCAGATCGACTTCCGACGCGTCACCATGCGCCCCGATAAGAAGGATGTGCCCAGGCCTATGTCCTGGGAAGGGGAGCTCTCTGATGGTGGCGCAGATGCAGACATGTGCGTGGACGACGACTCAATCCCCGAAAACTTATCCCTAACCTTAACCTCCAAACCGCCTGTCCACTCCCCGATCCTCCGCCTCAAACAACCTCCCCCAACGAGTAGCTACTCCCTGCATTCAACCCCTGGTAGTTCCCCACTACTGGGCCAGAGACATTCTCTCCCCGTTTTGCACAAAGCACTGAACGTTCCCGCCACGCCGAGCCCTGACAGCGCGGTGCACTCCGCCTACAGCGTGTTCAGCAGCCCAAGCCAGTCGCCGTTGACACAGAGACATGTGACGCTGACGCCGTCTTTGAGTAGGAATAATTCGGATGCGTCGCATTCGAGCTGTTGTTCGTATAGCTCGGTGTCGGTGTCGGTTAGTCCGACGCAGCAGTTTTCGCCCACCCATTCGCCTGTACAGGGAAGACACGTCCACCAAGTGCATGGCAGCCCGCTCCACCACAACGTATTGTACCGGAACATCGAGGCAGCCGAACACAGTGCCATATATGTGCGGCAGCAAGTCCCTACTCAGCCAGTACTGTCCTCCAACCACGAAGAAGTCCCTGGACCACCTGGTGAACATGAAATCGGACAAGAAAGGCCCGAAGAGCAAGAGGACAAGACAGGGATACAGCATGCGCTGCCTGCTGGGCCAGGGATCTCCAGGCAGCAGCTTATCAACAGTCCATGTCCGATTTGTGGAGACAAAATCTCCGGCTTCCACTATGGCATTTTCAGTTGCGAATCGTGTAAGGGCTTCTTTAAGCGGACGGTTCAAAATCGAAAGAATTATGTATGTCTCCGCGGTGCCATTTGTCCCGTAACGGTCGCCACGAGAAAGAAGTGCCCCGCTTGCCGTTTCGACAAGTGTCTTCAATGCGGCATGAAACTCGAAGctATTCGAGAAGACCGAACAAGAGGTGGACGTTCGACGTATCAATGTTCGTATACTCTGCCAGCATCGTTAATGGCGCACCCAGAACTGCGGGCAAGTAATACGGACTTGCGGCAAGGTTTAATGGGAGACCAGCACACTGTAGTGAAACTAGAACCCGCGGATTCGGGTATGATGACTGGCAAAAGAACGGGGAATGCTACGCCGCCAAGACATAGCGTGCCGCCTCTTCTACAGGAAATAATGGACGTAGAGCACCTTTGGCACTACACCGATGGAGAGCTAACTAAACTCCATCAAACGTCTTCAAGTGGGGCGAAAACTCCAGGAAGTAACTCTACGGCGGGAATTAGTTTGTCCACGCATCCGCTGTTAGCTAATACAGGGTTGGCGAGTTCAGCGGATACAAATCCGGATTTCGTTGCCAATTTATGCAACATCGCGGACCACAGATTGTATAAGATTGTCAAGTGGTGTAAGAGTTTGCCACTTTTCAAGAATATCTCAATTGACGATCAAATTTGCCTTCTAATCAACTCGTGGTgcgagttattattattttcgtgTTGTTTTCGATCTATGTCTACGCCAGGTGAAATCAGGgtatcATTAGGAAAAAGCATCACTTTAGCCCAAGCCCGCGAAATGGGCCTTCAAGCGTGCATCGAGCGCATGCTAAACTTCACAGATCACCTTAGGCGGTTACGAGTAGACCGCTATGAATATGTAGCCATGAAGGTGATCGTGCTCCTTACGTCCGACACCAGCGAACTGCGGGAAGCGGAGAAGGTGCGCGCCTCGCAGGAGAAGGCTCTGCAAGCCCTCCAGGGGTACACGTTGACGCATTATCCTGATATTCCTGCCAAGTTCGGAGAGCTGTTGTTGAGGATACCTGATCTGCAGCGGACGTGTCAGGTGGGCAAAGAGATGCTGACGATAAAATCAAAGGAGGGCGAAGGCCCATCGTTCAACCTGCTGATGGAGCTACTCCGAGGGGACCACTAG
- Protein Sequence
- MSEMRSPNVSVTALNVEAFPGSAADLGQRAEHQDSGEDAEVAQIDFRRVTMRPDKKDVPRPMSWEGELSDGGADADMCVDDDSIPENLSLTLTSKPPVHSPILRLKQPPPTSSYSLHSTPGSSPLLGQRHSLPVLHKALNVPATPSPDSAVHSAYSVFSSPSQSPLTQRHVTLTPSLSRNNSDASHSSCCSYSSVSVSVSPTQQFSPTHSPVQGRHVHQVHGSPLHHNVLYRNIEAAEHSAIYVRQQVPTQPVLSSNHEEVPGPPGEHEIGQERPEEQEDKTGIQHALPAGPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAICPVTVATRKKCPACRFDKCLQCGMKLEAIREDRTRGGRSTYQCSYTLPASLMAHPELRASNTDLRQGLMGDQHTVVKLEPADSGMMTGKRTGNATPPRHSVPPLLQEIMDVEHLWHYTDGELTKLHQTSSSGAKTPGSNSTAGISLSTHPLLANTGLASSADTNPDFVANLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLAQAREMGLQACIERMLNFTDHLRRLRVDRYEYVAMKVIVLLTSDTSELREAEKVRASQEKALQALQGYTLTHYPDIPAKFGELLLRIPDLQRTCQVGKEMLTIKSKEGEGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00469692;
- 90% Identity
- iTF_01104829;
- 80% Identity
- iTF_00768868;