Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720466.1:17992443-17994425[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.031 2.8e+02 4.0 0.3 26 48 100 121 84 125 0.80

2 11 0.013 1.2e+02 5.2 0.2 22 45 127 149 124 158 0.75

3 11 0.00037 3.4 10.1 0.1 20 51 187 218 180 220 0.88

4 11 0.023 2.1e+02 4.4 0.2 8 45 214 251 212 259 0.89

5 11 0.002 18 7.8 0.1 26 45 266 285 253 291 0.87

6 11 2.7 2.5e+04 -2.2 0.0 27 46 323 342 321 350 0.83

7 11 7e-05 0.64 12.5 0.1 26 45 352 371 337 379 0.84

8 11 0.31 2.9e+03 0.8 0.0 27 45 409 427 403 434 0.89

9 11 0.0094 87 5.6 0.1 24 45 441 462 433 467 0.85

10 11 0.42 3.9e+03 0.3 0.0 24 48 475 498 466 504 0.77

11 11 0.28 2.6e+03 0.9 0.0 26 45 565 584 543 589 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.031	2.8e+02	4.0	0.3	26	48	100	121	84	125	0.80
2	11	0.013	1.2e+02	5.2	0.2	22	45	127	149	124	158	0.75
3	11	0.00037	3.4	10.1	0.1	20	51	187	218	180	220	0.88
4	11	0.023	2.1e+02	4.4	0.2	8	45	214	251	212	259	0.89
5	11	0.002	18	7.8	0.1	26	45	266	285	253	291	0.87
6	11	2.7	2.5e+04	-2.2	0.0	27	46	323	342	321	350	0.83
7	11	7e-05	0.64	12.5	0.1	26	45	352	371	337	379	0.84
8	11	0.31	2.9e+03	0.8	0.0	27	45	409	427	403	434	0.89
9	11	0.0094	87	5.6	0.1	24	45	441	462	433	467	0.85
10	11	0.42	3.9e+03	0.3	0.0	24	48	475	498	466	504	0.77
11	11	0.28	2.6e+03	0.9	0.0	26	45	565	584	543	589	0.84

Sequence Information

Coding Sequence: ATGGGCAACAATTTGCACGGAGAAGCAAGCGGGGATGCGCAGAGAAACAAGGACACCATTACGCATGCGTCAACTGAGCCAGAAGACGGAAACAACGCTGACAAAATAGCCGCCAGTACATCGAGTTTGGGTGAAAAATTCGTAGAATCCAACATTACTGTGCAGGAAGAAGcagataataaaaatttagaagaaatTTGTATTAAAGTGGAAGATTCTACAGATTCCGAAAGTAGCAATGATCTACAAGCCACATCAAAAGTTGAAACTAAAAGCGACAATAATATTACCAAGTTTGAGTGTTTAATATGTCCCGCATATTTTGCAGACTGTCAAAATTTGATACGACACATGCGGACTCATTTTGTTGAGTATGATGAAAAGAAACTGAAATGTCCAGTTTGTAGCACTTTTGTACATCGTGCCAATTTGTACAGGCATTTACAAAAGCATATTGGTATTAAAGATTTTAGTTGCCATTTATGTGAAAAATCATTTACTGAAACATCTAGTCTGGAATATCATATCAAAACGCACAGTGATCAAAACATTTCACACGAATCGGAAAAAACTTATAAATGTCCAATATGCAACAAAACCTCTTCAGACAATAGTAACATGAAGAGACACATCCAAACTCACAAAGGTGCCAAAGAAAAACAAATCTCTCGAAAAACACCAAAAAAGATTTATCAATGCCATTTTTGTGATAAAACATCAACTGATAGTAGTAATATGAAAAGGCATATCCAAACACATGACAAAAGTAATAAACGTGTACGTACAAAAACTTACAAGTGTACAATTTGCAACAAAATATCTAATGATAGTAGTAATATGAAAAGACACTTGAAAAAACATTCTGGAATTAAGGATTTTCATTgcaatttatgtaataaatcatttacacataaGACCACTTTAGATTATCACTTGAAAACGCACAGTGGTCGCCGAGATTTTCtttgtgaaatatgtaaaaaaacatttatagaaaaaaaagaCCTCAACAAGCATATGCGAATACACAGCGAAAATAAgtccaaaatttataaatgtccTGTATGTTATAAAGTCTCTTCAGACAATAGCAACATGAAGAGACATATTAAAACACATGACGAAAACAAAGATTTTCATTgcaatttatgtaataaatattttacccgaaaaataaatttggatAGCCATATGAAATTACACAATGGACATCGTGATTTTCTAtgcgaaatatgcagtaaaacATTCGCAACAAAAAGAAATCTTAACTATCACATGCAATCACATAGCGAAGTAAAAAATGATCAGATATCTACAAAAACATATAAATGTCCAATTTGCAGTAAAACCTCTACAGACAATAGTAATATGAAAAGACACATAAGAACGcatgacaaaaattataaacgTGTATCTAAAAAAACTTATCCGTGTACAATTTGCAAGAAAAATTTCCCTGATAATAGTAGTATGAAACGACATTTGAAAACACATTTTGGAATCAGAAATTTTCATTGCagtttatgtaataaatattttacagaaaagGGCAGTTTGGATTACCACATGAAAATACACAGTGGGCAACGAGATTTTCAATGTGAAATATGCAACAAAACATTCATAGCAAAAAGCGACCTCACCAAGCACATGCGAACACATGGAAAATATAAACCAAACACAAAAACTTATCAATGCCATTTTTGTGACAAAACATCAACTGATAGCAGCAATATGAAAAGGCATATTAAAACTCATGCAAAAAATCAATCTGATGAAAAAAATACGAATGATAAAAGTGCGGTGCAAGACAAGAGTGATGTGAACTTTGAagatattaaagaagaaccgaaGGAGTATATTTCTACCGATATTTCAATAAAAGAAGAATCTCTGGAACTAAATTCGGATGatcttatattttataataacatagtGCAAACCATAACAAAAGACGATAAGACATTTGATGATTGTTCATAA
Protein Sequence: MGNNLHGEASGDAQRNKDTITHASTEPEDGNNADKIAASTSSLGEKFVESNITVQEEADNKNLEEICIKVEDSTDSESSNDLQATSKVETKSDNNITKFECLICPAYFADCQNLIRHMRTHFVEYDEKKLKCPVCSTFVHRANLYRHLQKHIGIKDFSCHLCEKSFTETSSLEYHIKTHSDQNISHESEKTYKCPICNKTSSDNSNMKRHIQTHKGAKEKQISRKTPKKIYQCHFCDKTSTDSSNMKRHIQTHDKSNKRVRTKTYKCTICNKISNDSSNMKRHLKKHSGIKDFHCNLCNKSFTHKTTLDYHLKTHSGRRDFLCEICKKTFIEKKDLNKHMRIHSENKSKIYKCPVCYKVSSDNSNMKRHIKTHDENKDFHCNLCNKYFTRKINLDSHMKLHNGHRDFLCEICSKTFATKRNLNYHMQSHSEVKNDQISTKTYKCPICSKTSTDNSNMKRHIRTHDKNYKRVSKKTYPCTICKKNFPDNSSMKRHLKTHFGIRNFHCSLCNKYFTEKGSLDYHMKIHSGQRDFQCEICNKTFIAKSDLTKHMRTHGKYKPNTKTYQCHFCDKTSTDSSNMKRHIKTHAKNQSDEKNTNDKSAVQDKSDVNFEDIKEEPKEYISTDISIKEESLELNSDDLIFYNNIVQTITKDDKTFDDCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767414;
90% Identity: iTF_00767414;
80% Identity: iTF_00767414;