Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720466.1:17992443-17994425[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 8.5e-06 0.0022 20.6 0.7 1 23 99 121 99 121 0.98

2 16 0.028 7.1 9.5 1.9 2 23 131 151 130 151 0.93

3 16 1.6e-05 0.0041 19.7 3.1 1 23 157 179 157 179 0.98

4 16 6.5e-08 1.6e-05 27.3 1.2 1 23 192 214 192 214 0.99

5 16 1.6e-06 0.0004 22.9 4.4 1 23 231 253 231 253 0.99

6 16 5.3e-06 0.0013 21.3 2.3 1 23 265 287 265 287 0.99

7 16 0.00048 0.12 15.1 7.7 1 23 293 315 293 315 0.98

8 16 1e-06 0.00026 23.5 1.2 1 23 321 343 321 343 0.96

9 16 5.6e-07 0.00014 24.3 1.1 1 23 351 373 351 373 0.99

10 16 9.6e-05 0.024 17.3 4.4 1 23 379 401 379 401 0.97

11 16 1.8e-06 0.00045 22.7 1.5 1 23 407 429 407 429 0.95

12 16 6.6e-08 1.7e-05 27.3 1.5 1 23 442 464 442 464 0.99

13 16 6.6e-07 0.00017 24.1 1.3 1 23 476 498 476 498 0.98

14 16 0.00077 0.2 14.5 3.2 1 23 504 526 504 526 0.98

15 16 1.9e-08 4.8e-06 29.0 1.2 1 23 532 554 532 554 0.99

16 16 1.5e-06 0.00038 23.0 4.8 1 23 564 586 564 586 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	8.5e-06	0.0022	20.6	0.7	1	23	99	121	99	121	0.98
2	16	0.028	7.1	9.5	1.9	2	23	131	151	130	151	0.93
3	16	1.6e-05	0.0041	19.7	3.1	1	23	157	179	157	179	0.98
4	16	6.5e-08	1.6e-05	27.3	1.2	1	23	192	214	192	214	0.99
5	16	1.6e-06	0.0004	22.9	4.4	1	23	231	253	231	253	0.99
6	16	5.3e-06	0.0013	21.3	2.3	1	23	265	287	265	287	0.99
7	16	0.00048	0.12	15.1	7.7	1	23	293	315	293	315	0.98
8	16	1e-06	0.00026	23.5	1.2	1	23	321	343	321	343	0.96
9	16	5.6e-07	0.00014	24.3	1.1	1	23	351	373	351	373	0.99
10	16	9.6e-05	0.024	17.3	4.4	1	23	379	401	379	401	0.97
11	16	1.8e-06	0.00045	22.7	1.5	1	23	407	429	407	429	0.95
12	16	6.6e-08	1.7e-05	27.3	1.5	1	23	442	464	442	464	0.99
13	16	6.6e-07	0.00017	24.1	1.3	1	23	476	498	476	498	0.98
14	16	0.00077	0.2	14.5	3.2	1	23	504	526	504	526	0.98
15	16	1.9e-08	4.8e-06	29.0	1.2	1	23	532	554	532	554	0.99
16	16	1.5e-06	0.00038	23.0	4.8	1	23	564	586	564	586	0.99

Sequence Information

Coding Sequence: ATGGGCAACAATTTGCACGGAGAAGCAAGCGGGGATGCGCAGAGAAACAAGGACACCATTACGCATGCGTCAACTGAGCCAGAAGACGGAAACAACGCTGACAAAATAGCCGCCAGTACATCGAGTTTGGGTGAAAAATTCGTAGAATCCAACATTACTGTGCAGGAAGAAGcagataataaaaatttagaagaaatTTGTATTAAAGTGGAAGATTCTACAGATTCCGAAAGTAGCAATGATCTACAAGCCACATCAAAAGTTGAAACTAAAAGCGACAATAATATTACCAAGTTTGAGTGTTTAATATGTCCCGCATATTTTGCAGACTGTCAAAATTTGATACGACACATGCGGACTCATTTTGTTGAGTATGATGAAAAGAAACTGAAATGTCCAGTTTGTAGCACTTTTGTACATCGTGCCAATTTGTACAGGCATTTACAAAAGCATATTGGTATTAAAGATTTTAGTTGCCATTTATGTGAAAAATCATTTACTGAAACATCTAGTCTGGAATATCATATCAAAACGCACAGTGATCAAAACATTTCACACGAATCGGAAAAAACTTATAAATGTCCAATATGCAACAAAACCTCTTCAGACAATAGTAACATGAAGAGACACATCCAAACTCACAAAGGTGCCAAAGAAAAACAAATCTCTCGAAAAACACCAAAAAAGATTTATCAATGCCATTTTTGTGATAAAACATCAACTGATAGTAGTAATATGAAAAGGCATATCCAAACACATGACAAAAGTAATAAACGTGTACGTACAAAAACTTACAAGTGTACAATTTGCAACAAAATATCTAATGATAGTAGTAATATGAAAAGACACTTGAAAAAACATTCTGGAATTAAGGATTTTCATTgcaatttatgtaataaatcatttacacataaGACCACTTTAGATTATCACTTGAAAACGCACAGTGGTCGCCGAGATTTTCtttgtgaaatatgtaaaaaaacatttatagaaaaaaaagaCCTCAACAAGCATATGCGAATACACAGCGAAAATAAgtccaaaatttataaatgtccTGTATGTTATAAAGTCTCTTCAGACAATAGCAACATGAAGAGACATATTAAAACACATGACGAAAACAAAGATTTTCATTgcaatttatgtaataaatattttacccgaaaaataaatttggatAGCCATATGAAATTACACAATGGACATCGTGATTTTCTAtgcgaaatatgcagtaaaacATTCGCAACAAAAAGAAATCTTAACTATCACATGCAATCACATAGCGAAGTAAAAAATGATCAGATATCTACAAAAACATATAAATGTCCAATTTGCAGTAAAACCTCTACAGACAATAGTAATATGAAAAGACACATAAGAACGcatgacaaaaattataaacgTGTATCTAAAAAAACTTATCCGTGTACAATTTGCAAGAAAAATTTCCCTGATAATAGTAGTATGAAACGACATTTGAAAACACATTTTGGAATCAGAAATTTTCATTGCagtttatgtaataaatattttacagaaaagGGCAGTTTGGATTACCACATGAAAATACACAGTGGGCAACGAGATTTTCAATGTGAAATATGCAACAAAACATTCATAGCAAAAAGCGACCTCACCAAGCACATGCGAACACATGGAAAATATAAACCAAACACAAAAACTTATCAATGCCATTTTTGTGACAAAACATCAACTGATAGCAGCAATATGAAAAGGCATATTAAAACTCATGCAAAAAATCAATCTGATGAAAAAAATACGAATGATAAAAGTGCGGTGCAAGACAAGAGTGATGTGAACTTTGAagatattaaagaagaaccgaaGGAGTATATTTCTACCGATATTTCAATAAAAGAAGAATCTCTGGAACTAAATTCGGATGatcttatattttataataacatagtGCAAACCATAACAAAAGACGATAAGACATTTGATGATTGTTCATAA
Protein Sequence: MGNNLHGEASGDAQRNKDTITHASTEPEDGNNADKIAASTSSLGEKFVESNITVQEEADNKNLEEICIKVEDSTDSESSNDLQATSKVETKSDNNITKFECLICPAYFADCQNLIRHMRTHFVEYDEKKLKCPVCSTFVHRANLYRHLQKHIGIKDFSCHLCEKSFTETSSLEYHIKTHSDQNISHESEKTYKCPICNKTSSDNSNMKRHIQTHKGAKEKQISRKTPKKIYQCHFCDKTSTDSSNMKRHIQTHDKSNKRVRTKTYKCTICNKISNDSSNMKRHLKKHSGIKDFHCNLCNKSFTHKTTLDYHLKTHSGRRDFLCEICKKTFIEKKDLNKHMRIHSENKSKIYKCPVCYKVSSDNSNMKRHIKTHDENKDFHCNLCNKYFTRKINLDSHMKLHNGHRDFLCEICSKTFATKRNLNYHMQSHSEVKNDQISTKTYKCPICSKTSTDNSNMKRHIRTHDKNYKRVSKKTYPCTICKKNFPDNSSMKRHLKTHFGIRNFHCSLCNKYFTEKGSLDYHMKIHSGQRDFQCEICNKTFIAKSDLTKHMRTHGKYKPNTKTYQCHFCDKTSTDSSNMKRHIKTHAKNQSDEKNTNDKSAVQDKSDVNFEDIKEEPKEYISTDISIKEESLELNSDDLIFYNNIVQTITKDDKTFDDCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767772;
90% Identity: iTF_00767772;
80% Identity: iTF_00767772;