Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720466.1:18064795-18068043[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0073 68 6.0 0.2 26 48 100 121 84 126 0.82

2 18 0.023 2.1e+02 4.4 0.2 22 45 127 149 124 158 0.76

3 18 3.3 3e+04 -2.5 0.0 27 45 187 205 183 211 0.87

4 18 0.021 1.9e+02 4.5 0.0 26 45 220 239 208 247 0.86

5 18 0.031 2.8e+02 4.0 0.2 26 45 251 270 239 276 0.86

6 18 0.74 6.8e+03 -0.4 0.0 26 44 335 353 330 358 0.88

7 18 0.00084 7.7 9.0 0.1 26 45 367 386 353 393 0.85

8 18 1.1 9.9e+03 -1.0 0.0 26 45 406 425 397 427 0.86

9 18 0.0078 72 5.9 0.0 22 46 436 460 430 468 0.82

10 18 0.6 5.5e+03 -0.1 0.0 27 45 561 579 555 588 0.87

11 18 0.0025 23 7.5 0.1 26 49 594 616 583 620 0.87

12 18 0.058 5.4e+02 3.1 0.1 25 45 682 702 651 708 0.85

13 18 9.8 9e+04 -4.0 0.4 27 46 712 731 711 733 0.80

14 18 0.82 7.6e+03 -0.6 0.0 26 44 739 757 734 762 0.87

15 18 0.011 1e+02 5.4 0.1 26 46 765 785 754 793 0.85

16 18 0.12 1.1e+03 2.1 0.1 26 45 799 818 790 826 0.86

17 18 4.8e-05 0.44 13.0 0.2 26 46 889 909 856 915 0.89

18 18 0.03 2.8e+02 4.0 0.0 26 45 978 997 959 1001 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0073	68	6.0	0.2	26	48	100	121	84	126	0.82
2	18	0.023	2.1e+02	4.4	0.2	22	45	127	149	124	158	0.76
3	18	3.3	3e+04	-2.5	0.0	27	45	187	205	183	211	0.87
4	18	0.021	1.9e+02	4.5	0.0	26	45	220	239	208	247	0.86
5	18	0.031	2.8e+02	4.0	0.2	26	45	251	270	239	276	0.86
6	18	0.74	6.8e+03	-0.4	0.0	26	44	335	353	330	358	0.88
7	18	0.00084	7.7	9.0	0.1	26	45	367	386	353	393	0.85
8	18	1.1	9.9e+03	-1.0	0.0	26	45	406	425	397	427	0.86
9	18	0.0078	72	5.9	0.0	22	46	436	460	430	468	0.82
10	18	0.6	5.5e+03	-0.1	0.0	27	45	561	579	555	588	0.87
11	18	0.0025	23	7.5	0.1	26	49	594	616	583	620	0.87
12	18	0.058	5.4e+02	3.1	0.1	25	45	682	702	651	708	0.85
13	18	9.8	9e+04	-4.0	0.4	27	46	712	731	711	733	0.80
14	18	0.82	7.6e+03	-0.6	0.0	26	44	739	757	734	762	0.87
15	18	0.011	1e+02	5.4	0.1	26	46	765	785	754	793	0.85
16	18	0.12	1.1e+03	2.1	0.1	26	45	799	818	790	826	0.86
17	18	4.8e-05	0.44	13.0	0.2	26	46	889	909	856	915	0.89
18	18	0.03	2.8e+02	4.0	0.0	26	45	978	997	959	1001	0.88

Sequence Information

Coding Sequence: ATGGCCAACAATTTGCATGGAGAAGCAAGCGAGGATGCGCAGAGAAACAGGGACACCACTACGCATGCGTCAACTGAGCCGGAAGACGGAGACAGCGCTGACAAAATGGCCGCAAGTGCGTCAGGTCTCGGTGAAATATCAGTAGAATTCAACAATATAAAGCAAGAAGAAGCGGATAATGAAAATTTCGAAGAAGTTTGTATTAAAATGGAAGATTCTATAAATTCCGAAAGTAGCAATGATCTACAAGCCACAGTAAAAGTCGAAAATACAAGCGACAGTAATATTACCAGGTTTGAGTGTTTAATATGTCCCGCATATTTTGCAGATAGTCAAAATTTGATACGACACATGCGGACTCATTTTGTTGAGTATGATGAAAAGAAACTAAAATGTCCAGTTTGTAGCACTTTTGTACATCGTGCCAATTTGTACAGGCATTTGAAAAAGCATATTGGTTTCAAGGATTTTAATTGCCATTTATGTGAAAAATCATTTACCGAAAAAGCTAGTCTGGAATATCATATTAAAATTCATACAGGGCAAAAAGATTTCCAAtgtttaatttgtaataaaacatttttgacaaacaaaaatttggaaaatcaTATCAAAACGCACAATGAAGAGAAGATTTCACACGaatccaaaatatataaatgtccaATTTGCGATAAAACCTCTTCAGACAATAGCAACATGAAAAGACACATTAAGACGCATGACAAAAAAAGACCTAAAAAAACgtacaaatgtacaatttgcaaCAAAATCTGTACTGATGCTAGTAATATGAAAAGACACATGAAAAATCATTTGGGAATTAAAGATTTTCATTGCAGTTTATGTAATAAATCTTTTACACATAAGACCGGTTTAGATTACCACTTGAAAGCACACAGTGGTCGTCGTGATTTTCTTtgcgaaatatgcagtaaaacATTCATGTCAAAAGGCAGTTTGGATTACCATATGAAAACGCACAGTGGTCGTCGAGACTTTAAATGCGAAATATGCGGCAAAGCATTCAATATAAAAAAGAACCTCAACAGGCATAAGCGAATACACAGCgaagtagagaataaatcaaaaACCTATCATTGCCCTGTATGTAATAAAGTCTCTGTAGATAGTAGCAACATGAAGAGACATATCCAAACTCACAAAGACGTCAAAGAACAAGAAATTTCTGCAGAAACACCAAAAAAGATTTATGATTGCCATATTTGCGGTAAAACATCAACTGATAACAGTAATATGAAAAGGCATATCCAAACATGTggcaaaaataataaactcgTATCTAAAAAAACTtacaaatgtacaatttgtaacaaaatttttaaatgtagtaGTAATATGAAACAACACATGAAAATGCATACCGAAATCAGAGATTTTCATTGCAGTTTATGtaataaatcttttaaataTAAGACCAGTTTAGATTATCACTTGAAAACGCACAGTGGTCGTCGTGATTTCCTTTGTGAAATATGCAGTAAAACATTCATAACAAAAGGACTCCTCAGCAGACATATGCGTATACACAACGAAGTAGAAAAGTCAAAAACGTATGAAGTCTCTACAGATAGTAGCAACTTGGACGGACATATCCAAATTCACAAAGACACCAACGAGAAAGAAATTCCTCTAGAAACACCAAAAAAGATTTATCAATGCAATTTTTGCGATAAAACATCAACTGATAGCAGTAATATGAAAAGACATATCCAAACACATGACAAGAGTAATAATTCTGTTCCTATAAAAACTTTCAAGTGTACAATTTGCAACATAATCTCTAGAGATAATAGTAATATGAAACGACACATGAAAAAGCATTTCGGAATTAGAAATTTCCATtgcaaaatatgtaataagtattTTACGGAAAAGGGCAGTTTGGATTACCACTTGAAAATACACAGTGGACGTCGAGATTTTCAGTGCGAAATATGTAAGAAAACATTCATAGCAAAAAAAGACCTAAACAACCATATGAAACGACACAGCGGCGTaaaaaatgaacgaaaaaaaACTTATCAATGTCCAGTTTGTAATAAGATTTCTTCAGACAATAGCAACATGAAGAAACACATCAGAACCCATGCCACAGTCAGAGACTACCATTGCagtatatgtaataaaaattttccaCGGCAGATCAATTTAGATTGCCATATGAAATTGCACAATGGACAACGTgattttcattgtgatatatgTAGCAAAACTTTCATAACAAAAAGAAACCTTGACAAGCACAAGCAGGCACACAAAAAAACTTATCAATGCCCTATATGCAGTAAAGTCTCACCATATGCAAGCACAATGAAGAGACATATAGAAACgcatgataaaaataataaaccagAACCTACAAAAACTTACAGGTGTTCAGTCTGCAACAAAACATCAACTGATAGCAGCAATATGAAACGGCACGTGCAAACTCATTACAGAATTAGAGAATTCAATTGCAGTTTATGTAAAATGTCTTTTACAGAAAAGGCTAGTTTGGATTACCACATGAAAATTCACAGTGATCGTCGGGATTTTGTTTGCAATATATGCAGCAAAACATTCATAGCAAGAAGATACCTCACCGAACACATGCGTGAACacaataaagtaaaaaataaaccaaacaaaaaaattcacCAATGCCCTATATGTAATAAAGTCTCTTCAGATAGTGCCAACTTGAAAAGACACATAAAAATTCATTCCGGAACCAAAGAGTTCCATTGCagtttatgtaataaatattttacagacaAGGGCTTGCAATACCATATGAAACTGCATAGCGGTCAGCGGGATTTTCAATGTGATGTATGTGCAAAAGCATTCATTACAAAAGGCAATCTCAACAAACACAAAATGCGaaatcatttagaaaataaacCAAAACCCACAAAAACTTATGAATGCCCTTTTTGCGACAAAACATCAACGGATAGCAGTAATATGAAAAGGCATATtaaaacacataaaaataatcagtctGATGAAAAAAATGTGAATGATAAAAGTGCAGTGCAAGAAAAGAGTGATGTgaaatttgaagatattaaagaagaacctcAGGAATCTACTGATTTTGCAGATTTTAGTGATAAACATACcgaatatatttcaataaaagaaGAATCTTTGGAACTAAACTCAGAtgatcatacattttataataacatagtGCAAACCATAACAAAAGACGATAAGACATTTGATGAtctaatataa
Protein Sequence: MANNLHGEASEDAQRNRDTTTHASTEPEDGDSADKMAASASGLGEISVEFNNIKQEEADNENFEEVCIKMEDSINSESSNDLQATVKVENTSDSNITRFECLICPAYFADSQNLIRHMRTHFVEYDEKKLKCPVCSTFVHRANLYRHLKKHIGFKDFNCHLCEKSFTEKASLEYHIKIHTGQKDFQCLICNKTFLTNKNLENHIKTHNEEKISHESKIYKCPICDKTSSDNSNMKRHIKTHDKKRPKKTYKCTICNKICTDASNMKRHMKNHLGIKDFHCSLCNKSFTHKTGLDYHLKAHSGRRDFLCEICSKTFMSKGSLDYHMKTHSGRRDFKCEICGKAFNIKKNLNRHKRIHSEVENKSKTYHCPVCNKVSVDSSNMKRHIQTHKDVKEQEISAETPKKIYDCHICGKTSTDNSNMKRHIQTCGKNNKLVSKKTYKCTICNKIFKCSSNMKQHMKMHTEIRDFHCSLCNKSFKYKTSLDYHLKTHSGRRDFLCEICSKTFITKGLLSRHMRIHNEVEKSKTYEVSTDSSNLDGHIQIHKDTNEKEIPLETPKKIYQCNFCDKTSTDSSNMKRHIQTHDKSNNSVPIKTFKCTICNIISRDNSNMKRHMKKHFGIRNFHCKICNKYFTEKGSLDYHLKIHSGRRDFQCEICKKTFIAKKDLNNHMKRHSGVKNERKKTYQCPVCNKISSDNSNMKKHIRTHATVRDYHCSICNKNFPRQINLDCHMKLHNGQRDFHCDICSKTFITKRNLDKHKQAHKKTYQCPICSKVSPYASTMKRHIETHDKNNKPEPTKTYRCSVCNKTSTDSSNMKRHVQTHYRIREFNCSLCKMSFTEKASLDYHMKIHSDRRDFVCNICSKTFIARRYLTEHMREHNKVKNKPNKKIHQCPICNKVSSDSANLKRHIKIHSGTKEFHCSLCNKYFTDKGLQYHMKLHSGQRDFQCDVCAKAFITKGNLNKHKMRNHLENKPKPTKTYECPFCDKTSTDSSNMKRHIKTHKNNQSDEKNVNDKSAVQEKSDVKFEDIKEEPQESTDFADFSDKHTEYISIKEESLELNSDDHTFYNNIVQTITKDDKTFDDLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767411;
90% Identity: iTF_00767411;
80% Identity: iTF_00767411;