Hrub084587.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpalus rubripes
Gene Symbol
-
Assembly
GCA_963082715.1
Location
OY720466.1:18064795-18068043[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 3.9e-06 0.00098 21.7 0.1 1 23 99 121 99 121 0.98
2 29 0.041 10 9.0 2.2 2 23 131 151 130 151 0.93
3 29 2.9e-05 0.0075 18.9 1.9 1 23 157 179 157 179 0.98
4 29 1.2e-05 0.003 20.2 1.6 1 23 185 207 185 207 0.99
5 29 5.3e-08 1.3e-05 27.6 1.1 1 23 219 241 219 241 0.99
6 29 2.3e-06 0.00058 22.4 3.6 1 23 250 272 250 272 0.99
7 29 0.0028 0.72 12.7 5.3 1 23 278 300 278 300 0.97
8 29 6.9e-05 0.017 17.8 1.1 1 23 306 328 306 328 0.96
9 29 4.7e-07 0.00012 24.6 1.2 1 23 334 356 334 356 0.99
10 29 3.1e-06 0.00078 22.0 1.2 1 23 366 388 366 388 0.98
11 29 3.4e-06 0.00086 21.9 0.8 1 22 405 426 405 426 0.96
12 29 0.00012 0.03 17.0 5.5 1 23 439 461 439 461 0.99
13 29 0.00065 0.17 14.7 5.9 1 23 467 489 467 489 0.98
14 29 1.1e-06 0.00027 23.4 0.6 1 23 495 517 495 517 0.96
15 29 1.1e-06 0.00027 23.5 2.3 1 23 559 581 559 581 0.99
16 29 1.3e-05 0.0032 20.1 1.9 1 23 593 615 593 615 0.99
17 29 0.0012 0.29 13.9 3.2 1 23 621 643 621 643 0.98
18 29 2.2e-06 0.00055 22.5 1.7 1 23 649 671 649 671 0.99
19 29 2.6e-07 6.5e-05 25.4 0.7 1 23 682 704 682 704 0.99
20 29 0.0073 1.9 11.4 4.4 1 23 710 732 710 732 0.97
21 29 0.00017 0.044 16.5 3.4 1 23 738 760 738 760 0.96
22 29 2.4e-05 0.0061 19.2 0.2 1 23 764 786 764 786 0.99
23 29 3.9e-06 0.001 21.7 1.9 1 23 798 820 798 820 0.99
24 29 0.0005 0.13 15.1 1.0 1 23 826 848 826 848 0.98
25 29 2.1e-05 0.0053 19.4 0.7 1 23 854 876 854 876 0.98
26 29 2.7e-07 6.8e-05 25.3 0.7 1 23 888 910 888 910 0.98
27 29 0.23 59 6.6 4.5 1 23 916 937 916 937 0.93
28 29 9.4e-06 0.0024 20.5 0.7 1 23 943 966 943 966 0.97
29 29 4.1e-07 0.0001 24.8 1.3 1 23 977 999 977 999 0.99

Sequence Information

Coding Sequence
ATGGCCAACAATTTGCATGGAGAAGCAAGCGAGGATGCGCAGAGAAACAGGGACACCACTACGCATGCGTCAACTGAGCCGGAAGACGGAGACAGCGCTGACAAAATGGCCGCAAGTGCGTCAGGTCTCGGTGAAATATCAGTAGAATTCAACAATATAAAGCAAGAAGAAGCGGATAATGAAAATTTCGAAGAAGTTTGTATTAAAATGGAAGATTCTATAAATTCCGAAAGTAGCAATGATCTACAAGCCACAGTAAAAGTCGAAAATACAAGCGACAGTAATATTACCAGGTTTGAGTGTTTAATATGTCCCGCATATTTTGCAGATAGTCAAAATTTGATACGACACATGCGGACTCATTTTGTTGAGTATGATGAAAAGAAACTAAAATGTCCAGTTTGTAGCACTTTTGTACATCGTGCCAATTTGTACAGGCATTTGAAAAAGCATATTGGTTTCAAGGATTTTAATTGCCATTTATGTGAAAAATCATTTACCGAAAAAGCTAGTCTGGAATATCATATTAAAATTCATACAGGGCAAAAAGATTTCCAAtgtttaatttgtaataaaacatttttgacaaacaaaaatttggaaaatcaTATCAAAACGCACAATGAAGAGAAGATTTCACACGaatccaaaatatataaatgtccaATTTGCGATAAAACCTCTTCAGACAATAGCAACATGAAAAGACACATTAAGACGCATGACAAAAAAAGACCTAAAAAAACgtacaaatgtacaatttgcaaCAAAATCTGTACTGATGCTAGTAATATGAAAAGACACATGAAAAATCATTTGGGAATTAAAGATTTTCATTGCAGTTTATGTAATAAATCTTTTACACATAAGACCGGTTTAGATTACCACTTGAAAGCACACAGTGGTCGTCGTGATTTTCTTtgcgaaatatgcagtaaaacATTCATGTCAAAAGGCAGTTTGGATTACCATATGAAAACGCACAGTGGTCGTCGAGACTTTAAATGCGAAATATGCGGCAAAGCATTCAATATAAAAAAGAACCTCAACAGGCATAAGCGAATACACAGCgaagtagagaataaatcaaaaACCTATCATTGCCCTGTATGTAATAAAGTCTCTGTAGATAGTAGCAACATGAAGAGACATATCCAAACTCACAAAGACGTCAAAGAACAAGAAATTTCTGCAGAAACACCAAAAAAGATTTATGATTGCCATATTTGCGGTAAAACATCAACTGATAACAGTAATATGAAAAGGCATATCCAAACATGTggcaaaaataataaactcgTATCTAAAAAAACTtacaaatgtacaatttgtaacaaaatttttaaatgtagtaGTAATATGAAACAACACATGAAAATGCATACCGAAATCAGAGATTTTCATTGCAGTTTATGtaataaatcttttaaataTAAGACCAGTTTAGATTATCACTTGAAAACGCACAGTGGTCGTCGTGATTTCCTTTGTGAAATATGCAGTAAAACATTCATAACAAAAGGACTCCTCAGCAGACATATGCGTATACACAACGAAGTAGAAAAGTCAAAAACGTATGAAGTCTCTACAGATAGTAGCAACTTGGACGGACATATCCAAATTCACAAAGACACCAACGAGAAAGAAATTCCTCTAGAAACACCAAAAAAGATTTATCAATGCAATTTTTGCGATAAAACATCAACTGATAGCAGTAATATGAAAAGACATATCCAAACACATGACAAGAGTAATAATTCTGTTCCTATAAAAACTTTCAAGTGTACAATTTGCAACATAATCTCTAGAGATAATAGTAATATGAAACGACACATGAAAAAGCATTTCGGAATTAGAAATTTCCATtgcaaaatatgtaataagtattTTACGGAAAAGGGCAGTTTGGATTACCACTTGAAAATACACAGTGGACGTCGAGATTTTCAGTGCGAAATATGTAAGAAAACATTCATAGCAAAAAAAGACCTAAACAACCATATGAAACGACACAGCGGCGTaaaaaatgaacgaaaaaaaACTTATCAATGTCCAGTTTGTAATAAGATTTCTTCAGACAATAGCAACATGAAGAAACACATCAGAACCCATGCCACAGTCAGAGACTACCATTGCagtatatgtaataaaaattttccaCGGCAGATCAATTTAGATTGCCATATGAAATTGCACAATGGACAACGTgattttcattgtgatatatgTAGCAAAACTTTCATAACAAAAAGAAACCTTGACAAGCACAAGCAGGCACACAAAAAAACTTATCAATGCCCTATATGCAGTAAAGTCTCACCATATGCAAGCACAATGAAGAGACATATAGAAACgcatgataaaaataataaaccagAACCTACAAAAACTTACAGGTGTTCAGTCTGCAACAAAACATCAACTGATAGCAGCAATATGAAACGGCACGTGCAAACTCATTACAGAATTAGAGAATTCAATTGCAGTTTATGTAAAATGTCTTTTACAGAAAAGGCTAGTTTGGATTACCACATGAAAATTCACAGTGATCGTCGGGATTTTGTTTGCAATATATGCAGCAAAACATTCATAGCAAGAAGATACCTCACCGAACACATGCGTGAACacaataaagtaaaaaataaaccaaacaaaaaaattcacCAATGCCCTATATGTAATAAAGTCTCTTCAGATAGTGCCAACTTGAAAAGACACATAAAAATTCATTCCGGAACCAAAGAGTTCCATTGCagtttatgtaataaatattttacagacaAGGGCTTGCAATACCATATGAAACTGCATAGCGGTCAGCGGGATTTTCAATGTGATGTATGTGCAAAAGCATTCATTACAAAAGGCAATCTCAACAAACACAAAATGCGaaatcatttagaaaataaacCAAAACCCACAAAAACTTATGAATGCCCTTTTTGCGACAAAACATCAACGGATAGCAGTAATATGAAAAGGCATATtaaaacacataaaaataatcagtctGATGAAAAAAATGTGAATGATAAAAGTGCAGTGCAAGAAAAGAGTGATGTgaaatttgaagatattaaagaagaacctcAGGAATCTACTGATTTTGCAGATTTTAGTGATAAACATACcgaatatatttcaataaaagaaGAATCTTTGGAACTAAACTCAGAtgatcatacattttataataacatagtGCAAACCATAACAAAAGACGATAAGACATTTGATGAtctaatataa
Protein Sequence
MANNLHGEASEDAQRNRDTTTHASTEPEDGDSADKMAASASGLGEISVEFNNIKQEEADNENFEEVCIKMEDSINSESSNDLQATVKVENTSDSNITRFECLICPAYFADSQNLIRHMRTHFVEYDEKKLKCPVCSTFVHRANLYRHLKKHIGFKDFNCHLCEKSFTEKASLEYHIKIHTGQKDFQCLICNKTFLTNKNLENHIKTHNEEKISHESKIYKCPICDKTSSDNSNMKRHIKTHDKKRPKKTYKCTICNKICTDASNMKRHMKNHLGIKDFHCSLCNKSFTHKTGLDYHLKAHSGRRDFLCEICSKTFMSKGSLDYHMKTHSGRRDFKCEICGKAFNIKKNLNRHKRIHSEVENKSKTYHCPVCNKVSVDSSNMKRHIQTHKDVKEQEISAETPKKIYDCHICGKTSTDNSNMKRHIQTCGKNNKLVSKKTYKCTICNKIFKCSSNMKQHMKMHTEIRDFHCSLCNKSFKYKTSLDYHLKTHSGRRDFLCEICSKTFITKGLLSRHMRIHNEVEKSKTYEVSTDSSNLDGHIQIHKDTNEKEIPLETPKKIYQCNFCDKTSTDSSNMKRHIQTHDKSNNSVPIKTFKCTICNIISRDNSNMKRHMKKHFGIRNFHCKICNKYFTEKGSLDYHLKIHSGRRDFQCEICKKTFIAKKDLNNHMKRHSGVKNERKKTYQCPVCNKISSDNSNMKKHIRTHATVRDYHCSICNKNFPRQINLDCHMKLHNGQRDFHCDICSKTFITKRNLDKHKQAHKKTYQCPICSKVSPYASTMKRHIETHDKNNKPEPTKTYRCSVCNKTSTDSSNMKRHVQTHYRIREFNCSLCKMSFTEKASLDYHMKIHSDRRDFVCNICSKTFIARRYLTEHMREHNKVKNKPNKKIHQCPICNKVSSDSANLKRHIKIHSGTKEFHCSLCNKYFTDKGLQYHMKLHSGQRDFQCDVCAKAFITKGNLNKHKMRNHLENKPKPTKTYECPFCDKTSTDSSNMKRHIKTHKNNQSDEKNVNDKSAVQEKSDVKFEDIKEEPQESTDFADFSDKHTEYISIKEESLELNSDDHTFYNNIVQTITKDDKTFDDLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00767771;
90% Identity
iTF_00767771;
80% Identity
iTF_00767771;