Hrub084585.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720466.1:18056593-18058473[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0045 41 6.7 0.1 26 48 100 121 85 126 0.85 2 10 0.026 2.4e+02 4.2 0.3 22 45 127 149 124 158 0.72 3 10 1.2 1.1e+04 -1.1 0.0 26 45 186 205 181 208 0.87 4 10 0.0023 22 7.6 0.0 21 45 216 240 213 245 0.86 5 10 0.02 1.9e+02 4.6 0.0 26 49 255 277 244 282 0.86 6 10 7.6 7e+04 -3.7 0.0 27 45 284 302 283 304 0.85 7 10 0.0026 24 7.4 0.1 18 45 338 365 320 371 0.79 8 10 0.0026 24 7.4 0.0 26 45 379 398 373 404 0.87 9 10 0.00081 7.5 9.0 0.2 26 46 435 455 426 463 0.87 10 10 6.8e-05 0.62 12.5 0.1 23 46 467 490 458 497 0.84
Sequence Information
- Coding Sequence
- ATGGCCAACAATTTGCACGGAGAAGCGTGCGAGGATGCACAGAGAAACAGGGACACCATTACGCATGCGTCAACTGATCTGGAAGACAGAGACAACGCTGATAATATAGCCGCGAGAACATCAGGTCTCGATGATATATCAGTAGAATCCAACAATATAGAGCAAGAAGAAGCGgataataaaaatttcgaaGAAGTTTGTATTAAAGTAGAATATTCTACAGATTCCGAGAGTAGCAATGATCTACAAGCCACATCAAAAGTCGAAACTACAAGCGACAATAATATTACCAAGTTTGAGTGTTTAATATGTCCAGCATATTTTGCAGACAGTCAAAATTTGATACGACACATGCGAACTCATTTTGTTGAGTATGATGAAAAGAAACTAAAATGTCCAGTTTGTAGCAGATTTGTACATCGCGCTAATTTGTACAGGCATTTAAAAAAGCATATTGGTATCAAGGATTTTAATTGccatttatgtaaaaaatcgTTTACTGAAAAATCTAGTCTGGAAtatcatattaaaatacataaaggACAAAAAGATTTCCAATGTTCAATTTGCagtaaaacatttttgacaaataaaaatttaaatgatcacATCAAAACACACAATGAACTGAATATTTCACCCGAATCAAAAAAAACGTATAAATGCCCAATTTGCGATAAAATCTCTTCAGACAATAGCAACATGAAAAGGCATATTAAGACGCATGACAAAAGTTATAAACGCGCACCTAAAAAAACTTACAAATGCTCATTTTGCAACAAAATCTCTACTGATAGCAGTAATATGAAACGACACATGAAAAAACATTTCGGAATTAGAGATTTTCAATGCAAtgtatgtaataaatcatttacacaaaagACCAGTTTGGATTACCACTTGAAAACGCATAGTGATCGTCGTGATTTTCATTGTGACAAATGCGGCAAAACATTCATAGCAAAAAGAAACCTCAACAgtcacatgcaaacacacaacGAAGTAAAAAATAAGCCAAAATCCACAAAAACTTACGAATGTGCTACATGCACTAAAATCTTTACAGACAGTAGCAACTTAAAGAGACACATCAAAACACATGACATAAGTTATAAACTGCCTCAAAAAACTtacaaatgtacaatttgcaaCAAAATTGCTACTGATAGTAATAACATGAAACGACACATGAAAACTCATTATGGAATCAAAGATTTCCATTGCAGTTTATGTAATAAGTATTTTACCGAAAAAGCCAGTTTGGATAACCATATGAAAATACACAGTGAAGGTCGAGATTTTCAATGTGAAATATGCAACAaaacattcaattcaaaaagAAACCTTAAAAGGCACTTGCAGACACACAGGGAAGTAAAAAATAAGCCAATATCCACAAAAACTTATGAATGTCCTATATGTAATAAAGTCTCTACAGATAGTAGCAACATGAAGAGACATATCCAAACTCACAAAGACTCCAAAGAAAAACAAATCCCTCGAGAAACACCAAAAACGACTTATCAATGCAATTTTTGCGACAAAACATCAACTGTTAGCAGTTATATAAAAAGACATATTAAAACTCATTCAAAATCTCATAACGCCCTAAAGGATTTTGCATGCAACGAGTGCAACAAAACATTTACTGCTattaaatatctaaataaaCATATGATGTCCCACATTACGGAAACAGGTCCAACAAACTTTGAAGTTATTAAAGAAGAACATAAGGAATACATTTCTACTAATTGTTCGGATACCAGTGATCAACATAACGATATTTCAATAAAAGAAGAATCTCTGAAACTAAACTACGATGATCgtacaatttataataatattgtgcAAACCATAAAAGACGATAAGGAAAAATGA
- Protein Sequence
- MANNLHGEACEDAQRNRDTITHASTDLEDRDNADNIAARTSGLDDISVESNNIEQEEADNKNFEEVCIKVEYSTDSESSNDLQATSKVETTSDNNITKFECLICPAYFADSQNLIRHMRTHFVEYDEKKLKCPVCSRFVHRANLYRHLKKHIGIKDFNCHLCKKSFTEKSSLEYHIKIHKGQKDFQCSICSKTFLTNKNLNDHIKTHNELNISPESKKTYKCPICDKISSDNSNMKRHIKTHDKSYKRAPKKTYKCSFCNKISTDSSNMKRHMKKHFGIRDFQCNVCNKSFTQKTSLDYHLKTHSDRRDFHCDKCGKTFIAKRNLNSHMQTHNEVKNKPKSTKTYECATCTKIFTDSSNLKRHIKTHDISYKLPQKTYKCTICNKIATDSNNMKRHMKTHYGIKDFHCSLCNKYFTEKASLDNHMKIHSEGRDFQCEICNKTFNSKRNLKRHLQTHREVKNKPISTKTYECPICNKVSTDSSNMKRHIQTHKDSKEKQIPRETPKTTYQCNFCDKTSTVSSYIKRHIKTHSKSHNALKDFACNECNKTFTAIKYLNKHMMSHITETGPTNFEVIKEEHKEYISTNCSDTSDQHNDISIKEESLKLNYDDRTIYNNIVQTIKDDKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767393;
- 90% Identity
- iTF_00767393;
- 80% Identity
- iTF_00767393;