Hrub084585.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720466.1:18056593-18058473[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0028 5.2 9.4 0.0 15 41 97 120 92 121 0.90 2 15 0.092 1.7e+02 4.6 1.3 6 41 121 150 120 155 0.81 3 15 5.6 1e+04 -1.1 4.4 3 35 144 172 142 180 0.65 4 15 0.98 1.8e+03 1.3 2.3 15 41 183 206 172 208 0.75 5 15 0.0019 3.6 10.0 0.8 11 41 214 241 210 242 0.85 6 15 0.00022 0.41 13.0 2.5 10 41 249 275 244 277 0.83 7 15 0.036 67 5.9 1.5 10 41 280 303 274 308 0.78 8 15 0.46 8.7e+02 2.3 2.8 17 41 310 331 299 333 0.80 9 15 0.0013 2.4 10.5 1.4 15 41 343 366 335 367 0.85 10 15 0.00031 0.58 12.5 2.2 11 41 374 399 370 400 0.85 11 15 2.8 5.3e+03 -0.2 0.5 18 29 407 418 404 428 0.77 12 15 0.00036 0.67 12.3 3.5 17 41 434 455 423 457 0.84 13 15 0.00076 1.4 11.2 1.0 15 41 467 490 460 492 0.84 14 15 0.037 69 5.8 1.6 8 41 501 529 494 535 0.80 15 15 5.4 1e+04 -1.1 4.8 18 38 541 562 523 567 0.70
Sequence Information
- Coding Sequence
- ATGGCCAACAATTTGCACGGAGAAGCGTGCGAGGATGCACAGAGAAACAGGGACACCATTACGCATGCGTCAACTGATCTGGAAGACAGAGACAACGCTGATAATATAGCCGCGAGAACATCAGGTCTCGATGATATATCAGTAGAATCCAACAATATAGAGCAAGAAGAAGCGgataataaaaatttcgaaGAAGTTTGTATTAAAGTAGAATATTCTACAGATTCCGAGAGTAGCAATGATCTACAAGCCACATCAAAAGTCGAAACTACAAGCGACAATAATATTACCAAGTTTGAGTGTTTAATATGTCCAGCATATTTTGCAGACAGTCAAAATTTGATACGACACATGCGAACTCATTTTGTTGAGTATGATGAAAAGAAACTAAAATGTCCAGTTTGTAGCAGATTTGTACATCGCGCTAATTTGTACAGGCATTTAAAAAAGCATATTGGTATCAAGGATTTTAATTGccatttatgtaaaaaatcgTTTACTGAAAAATCTAGTCTGGAAtatcatattaaaatacataaaggACAAAAAGATTTCCAATGTTCAATTTGCagtaaaacatttttgacaaataaaaatttaaatgatcacATCAAAACACACAATGAACTGAATATTTCACCCGAATCAAAAAAAACGTATAAATGCCCAATTTGCGATAAAATCTCTTCAGACAATAGCAACATGAAAAGGCATATTAAGACGCATGACAAAAGTTATAAACGCGCACCTAAAAAAACTTACAAATGCTCATTTTGCAACAAAATCTCTACTGATAGCAGTAATATGAAACGACACATGAAAAAACATTTCGGAATTAGAGATTTTCAATGCAAtgtatgtaataaatcatttacacaaaagACCAGTTTGGATTACCACTTGAAAACGCATAGTGATCGTCGTGATTTTCATTGTGACAAATGCGGCAAAACATTCATAGCAAAAAGAAACCTCAACAgtcacatgcaaacacacaacGAAGTAAAAAATAAGCCAAAATCCACAAAAACTTACGAATGTGCTACATGCACTAAAATCTTTACAGACAGTAGCAACTTAAAGAGACACATCAAAACACATGACATAAGTTATAAACTGCCTCAAAAAACTtacaaatgtacaatttgcaaCAAAATTGCTACTGATAGTAATAACATGAAACGACACATGAAAACTCATTATGGAATCAAAGATTTCCATTGCAGTTTATGTAATAAGTATTTTACCGAAAAAGCCAGTTTGGATAACCATATGAAAATACACAGTGAAGGTCGAGATTTTCAATGTGAAATATGCAACAaaacattcaattcaaaaagAAACCTTAAAAGGCACTTGCAGACACACAGGGAAGTAAAAAATAAGCCAATATCCACAAAAACTTATGAATGTCCTATATGTAATAAAGTCTCTACAGATAGTAGCAACATGAAGAGACATATCCAAACTCACAAAGACTCCAAAGAAAAACAAATCCCTCGAGAAACACCAAAAACGACTTATCAATGCAATTTTTGCGACAAAACATCAACTGTTAGCAGTTATATAAAAAGACATATTAAAACTCATTCAAAATCTCATAACGCCCTAAAGGATTTTGCATGCAACGAGTGCAACAAAACATTTACTGCTattaaatatctaaataaaCATATGATGTCCCACATTACGGAAACAGGTCCAACAAACTTTGAAGTTATTAAAGAAGAACATAAGGAATACATTTCTACTAATTGTTCGGATACCAGTGATCAACATAACGATATTTCAATAAAAGAAGAATCTCTGAAACTAAACTACGATGATCgtacaatttataataatattgtgcAAACCATAAAAGACGATAAGGAAAAATGA
- Protein Sequence
- MANNLHGEACEDAQRNRDTITHASTDLEDRDNADNIAARTSGLDDISVESNNIEQEEADNKNFEEVCIKVEYSTDSESSNDLQATSKVETTSDNNITKFECLICPAYFADSQNLIRHMRTHFVEYDEKKLKCPVCSRFVHRANLYRHLKKHIGIKDFNCHLCKKSFTEKSSLEYHIKIHKGQKDFQCSICSKTFLTNKNLNDHIKTHNELNISPESKKTYKCPICDKISSDNSNMKRHIKTHDKSYKRAPKKTYKCSFCNKISTDSSNMKRHMKKHFGIRDFQCNVCNKSFTQKTSLDYHLKTHSDRRDFHCDKCGKTFIAKRNLNSHMQTHNEVKNKPKSTKTYECATCTKIFTDSSNLKRHIKTHDISYKLPQKTYKCTICNKIATDSNNMKRHMKTHYGIKDFHCSLCNKYFTEKASLDNHMKIHSEGRDFQCEICNKTFNSKRNLKRHLQTHREVKNKPISTKTYECPICNKVSTDSSNMKRHIQTHKDSKEKQIPRETPKTTYQCNFCDKTSTVSSYIKRHIKTHSKSHNALKDFACNECNKTFTAIKYLNKHMMSHITETGPTNFEVIKEEHKEYISTNCSDTSDQHNDISIKEESLKLNYDDRTIYNNIVQTIKDDKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767415; iTF_00767770;
- 90% Identity
- iTF_00767415; iTF_00767770;
- 80% Identity
- iTF_00767415; iTF_00767770;