Hrub084585.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Harpalus rubripes
Gene Symbol
-
Assembly
GCA_963082715.1
Location
OY720466.1:18056593-18058473[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2.1e-06 0.00052 22.6 0.1 1 23 99 121 99 121 0.98
2 15 0.012 3.1 10.7 2.4 2 23 131 151 130 151 0.95
3 15 9.2e-06 0.0023 20.5 3.7 1 23 157 179 157 179 0.98
4 15 8.9e-06 0.0022 20.6 1.9 1 23 185 207 185 207 0.99
5 15 8e-08 2e-05 27.0 0.7 1 23 220 242 220 242 0.99
6 15 5.9e-06 0.0015 21.1 3.6 1 23 254 276 254 276 0.99
7 15 1.8e-06 0.00046 22.7 2.9 1 23 282 304 282 304 0.99
8 15 1.8e-06 0.00045 22.8 3.2 1 23 310 332 310 332 0.98
9 15 5.9e-08 1.5e-05 27.4 1.3 1 23 345 367 345 367 0.99
10 15 2.4e-06 0.0006 22.4 1.5 1 23 378 400 378 400 0.99
11 15 0.00019 0.047 16.4 2.9 1 23 406 428 406 428 0.98
12 15 3.1e-08 8e-06 28.3 3.1 1 23 434 456 434 456 0.99
13 15 9.5e-08 2.4e-05 26.8 0.4 1 23 469 491 469 491 0.99
14 15 2.8e-05 0.0071 19.0 2.3 1 23 508 530 508 530 0.99
15 15 9.1e-06 0.0023 20.5 1.1 1 23 540 562 540 562 0.97

Sequence Information

Coding Sequence
ATGGCCAACAATTTGCACGGAGAAGCGTGCGAGGATGCACAGAGAAACAGGGACACCATTACGCATGCGTCAACTGATCTGGAAGACAGAGACAACGCTGATAATATAGCCGCGAGAACATCAGGTCTCGATGATATATCAGTAGAATCCAACAATATAGAGCAAGAAGAAGCGgataataaaaatttcgaaGAAGTTTGTATTAAAGTAGAATATTCTACAGATTCCGAGAGTAGCAATGATCTACAAGCCACATCAAAAGTCGAAACTACAAGCGACAATAATATTACCAAGTTTGAGTGTTTAATATGTCCAGCATATTTTGCAGACAGTCAAAATTTGATACGACACATGCGAACTCATTTTGTTGAGTATGATGAAAAGAAACTAAAATGTCCAGTTTGTAGCAGATTTGTACATCGCGCTAATTTGTACAGGCATTTAAAAAAGCATATTGGTATCAAGGATTTTAATTGccatttatgtaaaaaatcgTTTACTGAAAAATCTAGTCTGGAAtatcatattaaaatacataaaggACAAAAAGATTTCCAATGTTCAATTTGCagtaaaacatttttgacaaataaaaatttaaatgatcacATCAAAACACACAATGAACTGAATATTTCACCCGAATCAAAAAAAACGTATAAATGCCCAATTTGCGATAAAATCTCTTCAGACAATAGCAACATGAAAAGGCATATTAAGACGCATGACAAAAGTTATAAACGCGCACCTAAAAAAACTTACAAATGCTCATTTTGCAACAAAATCTCTACTGATAGCAGTAATATGAAACGACACATGAAAAAACATTTCGGAATTAGAGATTTTCAATGCAAtgtatgtaataaatcatttacacaaaagACCAGTTTGGATTACCACTTGAAAACGCATAGTGATCGTCGTGATTTTCATTGTGACAAATGCGGCAAAACATTCATAGCAAAAAGAAACCTCAACAgtcacatgcaaacacacaacGAAGTAAAAAATAAGCCAAAATCCACAAAAACTTACGAATGTGCTACATGCACTAAAATCTTTACAGACAGTAGCAACTTAAAGAGACACATCAAAACACATGACATAAGTTATAAACTGCCTCAAAAAACTtacaaatgtacaatttgcaaCAAAATTGCTACTGATAGTAATAACATGAAACGACACATGAAAACTCATTATGGAATCAAAGATTTCCATTGCAGTTTATGTAATAAGTATTTTACCGAAAAAGCCAGTTTGGATAACCATATGAAAATACACAGTGAAGGTCGAGATTTTCAATGTGAAATATGCAACAaaacattcaattcaaaaagAAACCTTAAAAGGCACTTGCAGACACACAGGGAAGTAAAAAATAAGCCAATATCCACAAAAACTTATGAATGTCCTATATGTAATAAAGTCTCTACAGATAGTAGCAACATGAAGAGACATATCCAAACTCACAAAGACTCCAAAGAAAAACAAATCCCTCGAGAAACACCAAAAACGACTTATCAATGCAATTTTTGCGACAAAACATCAACTGTTAGCAGTTATATAAAAAGACATATTAAAACTCATTCAAAATCTCATAACGCCCTAAAGGATTTTGCATGCAACGAGTGCAACAAAACATTTACTGCTattaaatatctaaataaaCATATGATGTCCCACATTACGGAAACAGGTCCAACAAACTTTGAAGTTATTAAAGAAGAACATAAGGAATACATTTCTACTAATTGTTCGGATACCAGTGATCAACATAACGATATTTCAATAAAAGAAGAATCTCTGAAACTAAACTACGATGATCgtacaatttataataatattgtgcAAACCATAAAAGACGATAAGGAAAAATGA
Protein Sequence
MANNLHGEACEDAQRNRDTITHASTDLEDRDNADNIAARTSGLDDISVESNNIEQEEADNKNFEEVCIKVEYSTDSESSNDLQATSKVETTSDNNITKFECLICPAYFADSQNLIRHMRTHFVEYDEKKLKCPVCSRFVHRANLYRHLKKHIGIKDFNCHLCKKSFTEKSSLEYHIKIHKGQKDFQCSICSKTFLTNKNLNDHIKTHNELNISPESKKTYKCPICDKISSDNSNMKRHIKTHDKSYKRAPKKTYKCSFCNKISTDSSNMKRHMKKHFGIRDFQCNVCNKSFTQKTSLDYHLKTHSDRRDFHCDKCGKTFIAKRNLNSHMQTHNEVKNKPKSTKTYECATCTKIFTDSSNLKRHIKTHDISYKLPQKTYKCTICNKIATDSNNMKRHMKTHYGIKDFHCSLCNKYFTEKASLDNHMKIHSEGRDFQCEICNKTFNSKRNLKRHLQTHREVKNKPISTKTYECPICNKVSTDSSNMKRHIQTHKDSKEKQIPRETPKTTYQCNFCDKTSTVSSYIKRHIKTHSKSHNALKDFACNECNKTFTAIKYLNKHMMSHITETGPTNFEVIKEEHKEYISTNCSDTSDQHNDISIKEESLKLNYDDRTIYNNIVQTIKDDKEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00767393;
90% Identity
iTF_00767393;
80% Identity
iTF_00767393;