Basic Information

Insect: Halyomorpha halys
Gene Symbol: -
Assembly: GCA_000696795.2
Location: NW:195972-217373[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0029 2.8 7.6 0.1 18 49 78 109 74 113 0.86

2 15 0.0089 8.5 6.1 0.0 18 49 165 196 159 199 0.87

3 15 0.0087 8.3 6.1 0.4 17 48 193 224 192 226 0.90

4 15 0.0072 6.9 6.4 0.3 22 50 227 255 225 259 0.88

5 15 0.01 9.7 5.9 0.1 26 49 260 283 253 287 0.86

6 15 0.024 23 4.7 0.1 18 49 281 312 280 314 0.86

7 15 0.013 13 5.5 0.9 18 52 310 344 307 346 0.89

8 15 0.039 37 4.0 0.4 17 49 400 432 382 436 0.83

9 15 0.015 14 5.4 0.4 17 48 429 460 424 463 0.89

10 15 0.027 26 4.5 0.3 18 48 459 489 457 491 0.85

11 15 0.0066 6.3 6.5 0.5 21 49 491 519 487 523 0.91

12 15 0.0022 2.1 8.0 0.4 18 48 546 576 534 580 0.88

13 15 0.0036 3.4 7.4 0.5 16 49 573 606 572 610 0.90

14 15 0.065 62 3.3 0.1 18 51 604 637 602 640 0.84

15 15 0.011 10 5.8 0.2 22 48 664 690 658 691 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0029	2.8	7.6	0.1	18	49	78	109	74	113	0.86
2	15	0.0089	8.5	6.1	0.0	18	49	165	196	159	199	0.87
3	15	0.0087	8.3	6.1	0.4	17	48	193	224	192	226	0.90
4	15	0.0072	6.9	6.4	0.3	22	50	227	255	225	259	0.88
5	15	0.01	9.7	5.9	0.1	26	49	260	283	253	287	0.86
6	15	0.024	23	4.7	0.1	18	49	281	312	280	314	0.86
7	15	0.013	13	5.5	0.9	18	52	310	344	307	346	0.89
8	15	0.039	37	4.0	0.4	17	49	400	432	382	436	0.83
9	15	0.015	14	5.4	0.4	17	48	429	460	424	463	0.89
10	15	0.027	26	4.5	0.3	18	48	459	489	457	491	0.85
11	15	0.0066	6.3	6.5	0.5	21	49	491	519	487	523	0.91
12	15	0.0022	2.1	8.0	0.4	18	48	546	576	534	580	0.88
13	15	0.0036	3.4	7.4	0.5	16	49	573	606	572	610	0.90
14	15	0.065	62	3.3	0.1	18	51	604	637	602	640	0.84
15	15	0.011	10	5.8	0.2	22	48	664	690	658	691	0.86

Sequence Information

Coding Sequence: ATGGCTGATGAAATTTTTCCTTCaaTACCAATGATTGTTATCAAAGAAGAGAAAGGATTGGAGATTGATTATGGTGGACTTACTGatctaaaagaagaaatatttgtgAAACAAGAAGAACTGCTTATCCCAGATGAAGgtGCCAAGACTAGACGAGAGAAATCCCATCAATGccctcactgtgattataaatcaacaAACCTTTGGCatattaaaattcatgtaaTGGCCCGTCACACGGGTGAGAAGAAACATCAATGTCcttactgtgattataaatcagtaacaTCAAGCAATTTGAAAAGTCATATGAAGGCCCGTCACATACCTGAGAAATCTCATCagtgtcctcactgtgattataaatcagcaCTACCTGGAAGTATGAAAACGCATATTATGATCCATCACACAGGTGAGAAACCCTATCGGTGTTCTCACTGTGATTACAGATCAACATCATATGGACATGTGAAAAGtcatataatggcccgtcacACAGGTGAGAAATCCCATGAATGCCcttactgtgattataaatcagtaggaTCTGGTAATATGGTAAGGCATATAAAGGCCCGTCACACGGGCGAGAAGTcccatcaatgtcctcactgtgattatagATCAACACAAActggaaatatgaaaaatcatataatggtCCGTCACACAGATGAGAAGCcccatcaatgtcctcactgtgattataaatcagccCTATCTAGAAATGTGAAAAGTCATATAATGACCCATCATTCAGATAAGAAgtctcatcaatgtcctcactgtgattataaatcaacaCAATCTAGCAATATGAAAGCacatataatggcccgtcacACGGGTGAGAAACCCTATCAGTGTCcttactgtgattataaatcagttggATCTGGAAGTATGAAAAAGCATGTTATGGCTCGTCACATAGGTGAGAAGCCCCATGAATGTCCTCactgtgaatataaatcaacaaCATTTGGACATGTGAAAAGACATATAACATCGCGTCACACATTAAAACCTCAttttgCTAAAAGAAGTTACAATATGCGACTGAAGACCATACTGCAAGTTATAGAAAAAGCATTTGGTGCTGAGGATAGTtgccctaaaaaaaataaatcccatcaatgtcctcactgtgattataagTCAACACAACCTGGACATATTAAAGTGCATATAATGGCCCGACATACCGGAGAGAAGCCCCATCAATGccctcactgtgattataaatcagtaggaTCTGGACAAATGAAAAGCcatataatggcccgtcacACAGGTGAGAAGCCCCATCAATGTCCTTACTGTGAATACAAATCAACAAAATCTGGCCATATGAAAAGtcatataatggcccgtcacacaggtgagaaatcccatcaatgtcctcactgtgattatacATCAGTACAATCAGGAAGTATGAAAAGACATATAATAGCCCATCAcacaggtgagaagcctcatcagtgtccccactgtgattataaatcaacaCAATCTGAACATATGAAAAGtcatataatggcccgtcacACAGGTGAAAAGTCCTTTCAGTGTGCTCACTGTGATTACAAAGCaacaaaatttggaaatatgaaaactcatataatggcccgtcacACCGATGAGAAATCCCATCAGTGTccttattgtgattataaatcagtaggaTCTTGTAATATGAAGAGGCATATAAAGTCCCGTCACACAGGCGAGAAGTCCCATCagtgtcctcactgtgattatagATCAGTTCAATCTGAAACTATGAAGAAACATATCATGGCCCGTCACACAGGTGAGAAGCCGTATgagtgtcctcattgtgattataaatcagtagcatctggaaaaataaaatcacacataaTGTCCCGTCATACAGATAAGTTCGATAAATGCCCCCTCTGTGATTTTGAATCAGTAGGATCTGAAGACATGAAAACTCATATGGCCCTTCACTCAGGTGAAAAGGCCCATCagtgtcctcactgtgattataaatcagtaaaatcTGGCAATGTGAAAAGacatataatggcccgtcacACGTGA
Protein Sequence: MADEIFPSIPMIVIKEEKGLEIDYGGLTDLKEEIFVKQEELLIPDEGAKTRREKSHQCPHCDYKSTNLWHIKIHVMARHTGEKKHQCPYCDYKSVTSSNLKSHMKARHIPEKSHQCPHCDYKSALPGSMKTHIMIHHTGEKPYRCSHCDYRSTSYGHVKSHIMARHTGEKSHECPYCDYKSVGSGNMVRHIKARHTGEKSHQCPHCDYRSTQTGNMKNHIMVRHTDEKPHQCPHCDYKSALSRNVKSHIMTHHSDKKSHQCPHCDYKSTQSSNMKAHIMARHTGEKPYQCPYCDYKSVGSGSMKKHVMARHIGEKPHECPHCEYKSTTFGHVKRHITSRHTLKPHFAKRSYNMRLKTILQVIEKAFGAEDSCPKKNKSHQCPHCDYKSTQPGHIKVHIMARHTGEKPHQCPHCDYKSVGSGQMKSHIMARHTGEKPHQCPYCEYKSTKSGHMKSHIMARHTGEKSHQCPHCDYTSVQSGSMKRHIIAHHTGEKPHQCPHCDYKSTQSEHMKSHIMARHTGEKSFQCAHCDYKATKFGNMKTHIMARHTDEKSHQCPYCDYKSVGSCNMKRHIKSRHTGEKSHQCPHCDYRSVQSETMKKHIMARHTGEKPYECPHCDYKSVASGKIKSHIMSRHTDKFDKCPLCDFESVGSEDMKTHMALHSGEKAHQCPHCDYKSVKSGNVKRHIMARHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00764017;
90% Identity: iTF_00764017;
80% Identity: iTF_00764017;