Hhal006727.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:195972-217373[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.024 0.95 9.6 3.3 1 23 56 79 56 79 0.94 2 21 6.1e-06 0.00024 20.9 2.3 1 23 85 108 85 108 0.96 3 21 0.0038 0.15 12.0 2.7 1 23 114 136 114 137 0.95 4 21 0.0072 0.29 11.2 4.0 1 23 143 166 143 166 0.96 5 21 0.0018 0.072 13.1 0.4 1 23 172 195 172 195 0.95 6 21 0.00037 0.015 15.2 3.2 1 23 201 224 201 224 0.97 7 21 0.0069 0.27 11.3 5.1 1 23 230 252 230 253 0.96 8 21 5.1e-05 0.002 17.9 2.8 1 23 259 282 259 282 0.95 9 21 0.0018 0.072 13.1 0.3 1 23 288 311 288 311 0.95 10 21 0.045 1.8 8.7 6.0 1 23 317 340 317 340 0.96 11 21 0.0011 0.042 13.8 2.8 1 23 379 402 379 402 0.95 12 21 0.0057 0.23 11.5 1.5 1 23 408 431 408 431 0.95 13 21 0.0051 0.2 11.7 3.5 1 23 437 460 437 460 0.95 14 21 0.00037 0.015 15.3 3.3 1 23 466 488 466 489 0.95 15 21 0.0015 0.061 13.3 5.1 1 23 495 518 495 518 0.95 16 21 0.019 0.75 9.9 1.8 1 23 524 547 524 547 0.95 17 21 0.0044 0.18 11.8 4.7 1 23 553 576 553 576 0.97 18 21 0.0009 0.036 14.0 2.8 1 23 582 605 582 605 0.95 19 21 0.017 0.67 10.0 0.7 1 23 611 634 611 634 0.96 20 21 0.061 2.4 8.3 0.1 2 23 640 661 639 661 0.96 21 21 0.00075 0.03 14.3 2.4 1 23 667 690 667 690 0.95
Sequence Information
- Coding Sequence
- ATGGCTGATGAAATTTTTCCTTCaaTACCAATGATTGTTATCAAAGAAGAGAAAGGATTGGAGATTGATTATGGTGGACTTACTGatctaaaagaagaaatatttgtgAAACAAGAAGAACTGCTTATCCCAGATGAAGgtGCCAAGACTAGACGAGAGAAATCCCATCAATGccctcactgtgattataaatcaacaAACCTTTGGCatattaaaattcatgtaaTGGCCCGTCACACGGGTGAGAAGAAACATCAATGTCcttactgtgattataaatcagtaacaTCAAGCAATTTGAAAAGTCATATGAAGGCCCGTCACATACCTGAGAAATCTCATCagtgtcctcactgtgattataaatcagcaCTACCTGGAAGTATGAAAACGCATATTATGATCCATCACACAGGTGAGAAACCCTATCGGTGTTCTCACTGTGATTACAGATCAACATCATATGGACATGTGAAAAGtcatataatggcccgtcacACAGGTGAGAAATCCCATGAATGCCcttactgtgattataaatcagtaggaTCTGGTAATATGGTAAGGCATATAAAGGCCCGTCACACGGGCGAGAAGTcccatcaatgtcctcactgtgattatagATCAACACAAActggaaatatgaaaaatcatataatggtCCGTCACACAGATGAGAAGCcccatcaatgtcctcactgtgattataaatcagccCTATCTAGAAATGTGAAAAGTCATATAATGACCCATCATTCAGATAAGAAgtctcatcaatgtcctcactgtgattataaatcaacaCAATCTAGCAATATGAAAGCacatataatggcccgtcacACGGGTGAGAAACCCTATCAGTGTCcttactgtgattataaatcagttggATCTGGAAGTATGAAAAAGCATGTTATGGCTCGTCACATAGGTGAGAAGCCCCATGAATGTCCTCactgtgaatataaatcaacaaCATTTGGACATGTGAAAAGACATATAACATCGCGTCACACATTAAAACCTCAttttgCTAAAAGAAGTTACAATATGCGACTGAAGACCATACTGCAAGTTATAGAAAAAGCATTTGGTGCTGAGGATAGTtgccctaaaaaaaataaatcccatcaatgtcctcactgtgattataagTCAACACAACCTGGACATATTAAAGTGCATATAATGGCCCGACATACCGGAGAGAAGCCCCATCAATGccctcactgtgattataaatcagtaggaTCTGGACAAATGAAAAGCcatataatggcccgtcacACAGGTGAGAAGCCCCATCAATGTCCTTACTGTGAATACAAATCAACAAAATCTGGCCATATGAAAAGtcatataatggcccgtcacacaggtgagaaatcccatcaatgtcctcactgtgattatacATCAGTACAATCAGGAAGTATGAAAAGACATATAATAGCCCATCAcacaggtgagaagcctcatcagtgtccccactgtgattataaatcaacaCAATCTGAACATATGAAAAGtcatataatggcccgtcacACAGGTGAAAAGTCCTTTCAGTGTGCTCACTGTGATTACAAAGCaacaaaatttggaaatatgaaaactcatataatggcccgtcacACCGATGAGAAATCCCATCAGTGTccttattgtgattataaatcagtaggaTCTTGTAATATGAAGAGGCATATAAAGTCCCGTCACACAGGCGAGAAGTCCCATCagtgtcctcactgtgattatagATCAGTTCAATCTGAAACTATGAAGAAACATATCATGGCCCGTCACACAGGTGAGAAGCCGTATgagtgtcctcattgtgattataaatcagtagcatctggaaaaataaaatcacacataaTGTCCCGTCATACAGATAAGTTCGATAAATGCCCCCTCTGTGATTTTGAATCAGTAGGATCTGAAGACATGAAAACTCATATGGCCCTTCACTCAGGTGAAAAGGCCCATCagtgtcctcactgtgattataaatcagtaaaatcTGGCAATGTGAAAAGacatataatggcccgtcacACGTGA
- Protein Sequence
- MADEIFPSIPMIVIKEEKGLEIDYGGLTDLKEEIFVKQEELLIPDEGAKTRREKSHQCPHCDYKSTNLWHIKIHVMARHTGEKKHQCPYCDYKSVTSSNLKSHMKARHIPEKSHQCPHCDYKSALPGSMKTHIMIHHTGEKPYRCSHCDYRSTSYGHVKSHIMARHTGEKSHECPYCDYKSVGSGNMVRHIKARHTGEKSHQCPHCDYRSTQTGNMKNHIMVRHTDEKPHQCPHCDYKSALSRNVKSHIMTHHSDKKSHQCPHCDYKSTQSSNMKAHIMARHTGEKPYQCPYCDYKSVGSGSMKKHVMARHIGEKPHECPHCEYKSTTFGHVKRHITSRHTLKPHFAKRSYNMRLKTILQVIEKAFGAEDSCPKKNKSHQCPHCDYKSTQPGHIKVHIMARHTGEKPHQCPHCDYKSVGSGQMKSHIMARHTGEKPHQCPYCEYKSTKSGHMKSHIMARHTGEKSHQCPHCDYTSVQSGSMKRHIIAHHTGEKPHQCPHCDYKSTQSEHMKSHIMARHTGEKSFQCAHCDYKATKFGNMKTHIMARHTDEKSHQCPYCDYKSVGSCNMKRHIKSRHTGEKSHQCPHCDYRSVQSETMKKHIMARHTGEKPYECPHCDYKSVASGKIKSHIMSRHTDKFDKCPLCDFESVGSEDMKTHMALHSGEKAHQCPHCDYKSVKSGNVKRHIMARHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764333;
- 90% Identity
- iTF_00764333;
- 80% Identity
- iTF_00764333;