Basic Information

Insect: Halyomorpha halys
Gene Symbol: -
Assembly: GCA_000696795.2
Location: NW:108019-136160[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 1.1 1.1e+03 -0.6 0.1 21 43 6 28 3 36 0.72

2 23 0.0041 3.9 7.2 0.2 22 48 92 118 87 123 0.87

3 23 0.045 43 3.8 1.2 21 48 120 147 116 150 0.92

4 23 0.0016 1.6 8.4 0.2 18 45 146 173 144 178 0.87

5 23 0.025 23 4.7 0.2 21 48 178 205 173 211 0.84

6 23 0.019 18 5.0 0.4 22 49 208 235 204 239 0.90

7 23 0.037 35 4.1 1.0 19 44 234 259 231 264 0.86

8 23 0.0027 2.6 7.8 0.4 21 49 265 293 260 298 0.88

9 23 0.012 11 5.7 0.7 18 48 291 321 290 326 0.85

10 23 0.51 4.8e+02 0.5 0.1 21 44 323 346 321 356 0.79

11 23 0.46 4.4e+02 0.6 0.1 20 44 351 375 339 379 0.77

12 23 0.0011 1.1 9.0 0.1 18 45 377 404 369 409 0.89

13 23 0.022 21 4.8 0.1 21 48 409 436 404 441 0.85

14 23 0.00019 0.18 11.4 0.1 14 48 539 574 537 576 0.84

15 23 0.016 15 5.3 0.2 21 48 576 603 572 608 0.88

16 23 0.55 5.3e+02 0.3 0.5 21 44 605 628 603 638 0.72

17 23 1.2 1.2e+03 -0.8 0.1 21 46 634 659 630 666 0.81

18 23 0.079 76 3.0 0.2 21 45 692 716 688 721 0.88

19 23 6.7e-05 0.064 12.9 0.2 21 50 721 750 716 754 0.88

20 23 0.19 1.8e+02 1.8 0.3 21 46 779 804 771 810 0.78

21 23 0.085 81 2.9 0.2 22 48 809 835 806 842 0.83

22 23 0.79 7.6e+02 -0.2 0.1 21 32 837 848 832 866 0.68

23 23 0.0076 7.2 6.3 0.2 21 50 866 895 858 899 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	1.1	1.1e+03	-0.6	0.1	21	43	6	28	3	36	0.72
2	23	0.0041	3.9	7.2	0.2	22	48	92	118	87	123	0.87
3	23	0.045	43	3.8	1.2	21	48	120	147	116	150	0.92
4	23	0.0016	1.6	8.4	0.2	18	45	146	173	144	178	0.87
5	23	0.025	23	4.7	0.2	21	48	178	205	173	211	0.84
6	23	0.019	18	5.0	0.4	22	49	208	235	204	239	0.90
7	23	0.037	35	4.1	1.0	19	44	234	259	231	264	0.86
8	23	0.0027	2.6	7.8	0.4	21	49	265	293	260	298	0.88
9	23	0.012	11	5.7	0.7	18	48	291	321	290	326	0.85
10	23	0.51	4.8e+02	0.5	0.1	21	44	323	346	321	356	0.79
11	23	0.46	4.4e+02	0.6	0.1	20	44	351	375	339	379	0.77
12	23	0.0011	1.1	9.0	0.1	18	45	377	404	369	409	0.89
13	23	0.022	21	4.8	0.1	21	48	409	436	404	441	0.85
14	23	0.00019	0.18	11.4	0.1	14	48	539	574	537	576	0.84
15	23	0.016	15	5.3	0.2	21	48	576	603	572	608	0.88
16	23	0.55	5.3e+02	0.3	0.5	21	44	605	628	603	638	0.72
17	23	1.2	1.2e+03	-0.8	0.1	21	46	634	659	630	666	0.81
18	23	0.079	76	3.0	0.2	21	45	692	716	688	721	0.88
19	23	6.7e-05	0.064	12.9	0.2	21	50	721	750	716	754	0.88
20	23	0.19	1.8e+02	1.8	0.3	21	46	779	804	771	810	0.78
21	23	0.085	81	2.9	0.2	22	48	809	835	806	842	0.83
22	23	0.79	7.6e+02	-0.2	0.1	21	32	837	848	832	866	0.68
23	23	0.0076	7.2	6.3	0.2	21	50	866	895	858	899	0.88

Sequence Information

Coding Sequence: ATGATGTCTAATAGAGCTGAGAACACTCTTAAATGTCcttattgtgaatataaagttgtagaaaaaagtcttatcataaaacatataatggTACATCATTCAATTCAGAAGAGGAAGTGTCctctttataaatatgaaacagtgcctactaatttaaaacatcataaaattagCTGTCATGCAGATgagaagttctatcaatgtcattactgttattatagagcagtaaaaaaaagtcatgtaaaGCAACATATAATGGCTCTTCATACTGGTGATAAGCCTCATAAGTGCccttattgtgattataaagcAACACAAAGTGTACATTTGAAAAGACATATAATGGCCTAtcatactggtgagaagcctcataaGTGTCCTCATTGCGATTATGAAGCAACCCAAATTTGTCATTTGAAAAAGCATATTATGCACcgtcatacaggtgagaagcctTATAAGTGCCCTCATTGTGACTATAAAGCCACTCAAAGTGATACTTTGAAAAGACATGTAATGTCCCTTCATATAGAGGAGAAGCCTCataaatgtcctcattgtgactaTAAAGCAGCACAAAGTGGTTATTTGAAAACACATATAATGCAACATCATACTTATGAGAAGCCTCATAAGTGTCCgcattgtgattataaaacaACTCAAATTGGTTATTTGAAAAAGCATATAATGCACCGCCATAtaggtgagaagcctcataaatgtcctcattgtgactaTAAAGCCACACAACGGGCTACTTTGAAAAGACATATAATATCTCTTCATACAGAAGAGAAGCCTTATAAGTGTCCTTATTGTGACTATAAATCAACACAAAGTGGTCATTTGAAAACACATATAATGCACCGTCATACATGTGAGAAGCCTCATAAGTGCCCTAATTGTGACtataaaacaacacaaataagcaaTTTGAAACACCATGTAATGGCTCTtcatactggtgagaagcctcataagtgtcctcattgtgattataaagcaACACAAATCGGTACTTTGAAAACACACATCCTGTCCCTTCATACAGATGAGAAGCCTCATAAGTGTCCTCATTGCGATTATAAAACATCACTAATTGGTAATTTGAAAACTCACATAATGCGTCATACAGGTGAGAAACCTCATAAGTGTCCTTATTGTGACTTTAGAGCAACACAAAGTTTTAGTTTGAAAAGACATATAATGTCCTTtcatactggtgagaagcctcataagtgtcctcattgtgattacaAAGCAACACAAATTGGTAGTTTGAAAAGACATATGATGACCCTTCACACAGATGATAAGCCTCATGAAATTGCATTGTGTGACATTTCTTTTAGAAGAATGGATCAAATTGATATAAGTAACActggtattttaattaaagaagaaattactGTGAAGATGGAGCCCTGCATGTCCATGAATGATATTAAAGAAGAGGAAATACAAGAGTTCGATTGTGaTGAAAATAACTCtgatatttcaattaaagaagaaataactgATAAGACCAATTCCTCTGgggCCATAGATTCTGTTTACCAGACAAAGAAGATCAAACAATATGATTTGGTATCTACCTTCAACATCAATTCGAAGAAAGGTAGTAGGTCTAATACAGTTGAGAACCCTAATAAATGTCCTTATTGTGACCATAAAGCATTACAAATTGGTAATTTGAAAAGACATATCATGAACCACCATtcaggtgagaagcctcataaatgtcctcattgtgacttTAATACAGCAACCAAACGTaatttgaaaatacatataatgtTCCTACATACTGGTGAGAGGCCTCAtaagtgtcctcattgtgactaTAGTGCAGTTACTAAAAGTTGtttaaacaaacatataatGGCCCTTCATACTGGGGAGAAGCCTCATAAGTGTTCTTATTGTGACTATAAAGCAACACAGATTTGTcaattgaaaaaacatataatggcccttcatactggtgagaagcctcacAAGTGTTCTCATTGTGACTATAGAGCAACACAAATGGGTTCTTTGAAAAATCATATGATGGCCTTTCATACAGATGAGAAGCCTCAtaagtgtcctcattgtgaccATAGAACTAAACTAAGTATTCTTTTGaaaagacatataatgtctCTTCACTCTGGTGAGAAACCTCATATTTGTCCTTATTGCGATTATAAAGCAACACAAATTGGCAATTTGAAAAGACATATCATTTATCGTCATACAAGTGACAAGCCTCATAAGTGTTATCATTGCGATTATAAAACAGCTACAGTGGGTAATTTAAAGGAACATATAATGGCCCTTCAcactggtgagaagcctcataaGTGTCCCCATTGTGAATACAAAGCTACACGAAATGGTGCTCTGAGAAATCATATAATGACTTGTCATACTGATGATAAACCTCataaatgtcctcattgtgactaTAGAGCTAAACTAAGTGGTCGTCTGAAAAGACATATAATGTCCCTTCACACTAATGAGAAGCCTCAtaagtgtcctcattgtgattataaagctACACGGattgattatttgaaaacacATGTAATGGCTCACCATATAGGCGAGAGACCTCATAAGTGTCCccattgtgattataaagcaACACAAATTAGTAATTTGAAAAAGCATATAATGGCTCTTCATACAGGTAAGAAGGCTCGTAATTGTCCTCATTGTGACTTTAATACAGCAACAGTAAGTAATTTAAAGGAACACATAAAGGCCCTCCACAAAGATGAGAAGTCTTATAAGGGCCCTTCACAAAGGTGA
Protein Sequence: MMSNRAENTLKCPYCEYKVVEKSLIIKHIMVHHSIQKRKCPLYKYETVPTNLKHHKISCHADEKFYQCHYCYYRAVKKSHVKQHIMALHTGDKPHKCPYCDYKATQSVHLKRHIMAYHTGEKPHKCPHCDYEATQICHLKKHIMHRHTGEKPYKCPHCDYKATQSDTLKRHVMSLHIEEKPHKCPHCDYKAAQSGYLKTHIMQHHTYEKPHKCPHCDYKTTQIGYLKKHIMHRHIGEKPHKCPHCDYKATQRATLKRHIISLHTEEKPYKCPYCDYKSTQSGHLKTHIMHRHTCEKPHKCPNCDYKTTQISNLKHHVMALHTGEKPHKCPHCDYKATQIGTLKTHILSLHTDEKPHKCPHCDYKTSLIGNLKTHIMRHTGEKPHKCPYCDFRATQSFSLKRHIMSFHTGEKPHKCPHCDYKATQIGSLKRHMMTLHTDDKPHEIALCDISFRRMDQIDISNTGILIKEEITVKMEPCMSMNDIKEEEIQEFDCDENNSDISIKEEITDKTNSSGAIDSVYQTKKIKQYDLVSTFNINSKKGSRSNTVENPNKCPYCDHKALQIGNLKRHIMNHHSGEKPHKCPHCDFNTATKRNLKIHIMFLHTGERPHKCPHCDYSAVTKSCLNKHIMALHTGEKPHKCSYCDYKATQICQLKKHIMALHTGEKPHKCSHCDYRATQMGSLKNHMMAFHTDEKPHKCPHCDHRTKLSILLKRHIMSLHSGEKPHICPYCDYKATQIGNLKRHIIYRHTSDKPHKCYHCDYKTATVGNLKEHIMALHTGEKPHKCPHCEYKATRNGALRNHIMTCHTDDKPHKCPHCDYRAKLSGRLKRHIMSLHTNEKPHKCPHCDYKATRIDYLKTHVMAHHIGERPHKCPHCDYKATQISNLKKHIMALHTGKKARNCPHCDFNTATVSNLKEHIKALHKDEKSYKGPSQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00764003;
90% Identity: iTF_00764003;
80% Identity: iTF_00764003;