Basic Information

Insect: Halyomorpha halys
Gene Symbol: -
Assembly: GCA_000696795.2
Location: NW:5414-8639[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.16 1.5e+02 2.1 0.4 18 48 3 33 1 34 0.68

2 20 0.00019 0.18 11.4 0.3 17 48 31 62 26 64 0.84

3 20 0.00047 0.45 10.2 0.1 18 48 61 91 59 94 0.87

4 20 0.00025 0.24 11.0 0.5 20 49 92 121 88 126 0.88

5 20 0.21 2e+02 1.7 0.3 18 44 119 145 117 155 0.72

6 20 0.16 1.5e+02 2.1 0.1 21 48 151 178 146 180 0.83

7 20 0.00017 0.16 11.6 0.2 18 48 177 207 173 209 0.92

8 20 0.012 11 5.7 0.1 18 48 206 236 204 237 0.88

9 20 0.015 14 5.4 0.3 21 48 238 265 234 267 0.82

10 20 0.053 51 3.6 0.4 19 48 265 294 262 299 0.83

11 20 0.066 63 3.3 0.4 21 48 325 352 321 357 0.78

12 20 0.054 51 3.6 0.2 21 50 354 383 351 384 0.87

13 20 0.0026 2.5 7.8 0.2 17 48 379 410 375 413 0.90

14 20 0.0064 6.1 6.5 0.2 18 48 409 439 407 444 0.81

15 20 0.011 10 5.8 0.2 18 48 467 497 462 499 0.89

16 20 0.0081 7.8 6.2 0.2 17 47 495 525 490 529 0.84

17 20 0.0054 5.1 6.8 0.5 22 49 529 556 525 560 0.87

18 20 0.18 1.7e+02 1.9 0.2 18 48 554 584 553 589 0.75

19 20 0.004 3.8 7.2 0.3 21 49 586 614 582 618 0.88

20 20 0.0083 7.9 6.2 0.2 18 44 612 638 610 642 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.16	1.5e+02	2.1	0.4	18	48	3	33	1	34	0.68
2	20	0.00019	0.18	11.4	0.3	17	48	31	62	26	64	0.84
3	20	0.00047	0.45	10.2	0.1	18	48	61	91	59	94	0.87
4	20	0.00025	0.24	11.0	0.5	20	49	92	121	88	126	0.88
5	20	0.21	2e+02	1.7	0.3	18	44	119	145	117	155	0.72
6	20	0.16	1.5e+02	2.1	0.1	21	48	151	178	146	180	0.83
7	20	0.00017	0.16	11.6	0.2	18	48	177	207	173	209	0.92
8	20	0.012	11	5.7	0.1	18	48	206	236	204	237	0.88
9	20	0.015	14	5.4	0.3	21	48	238	265	234	267	0.82
10	20	0.053	51	3.6	0.4	19	48	265	294	262	299	0.83
11	20	0.066	63	3.3	0.4	21	48	325	352	321	357	0.78
12	20	0.054	51	3.6	0.2	21	50	354	383	351	384	0.87
13	20	0.0026	2.5	7.8	0.2	17	48	379	410	375	413	0.90
14	20	0.0064	6.1	6.5	0.2	18	48	409	439	407	444	0.81
15	20	0.011	10	5.8	0.2	18	48	467	497	462	499	0.89
16	20	0.0081	7.8	6.2	0.2	17	47	495	525	490	529	0.84
17	20	0.0054	5.1	6.8	0.5	22	49	529	556	525	560	0.87
18	20	0.18	1.7e+02	1.9	0.2	18	48	554	584	553	589	0.75
19	20	0.004	3.8	7.2	0.3	21	49	586	614	582	618	0.88
20	20	0.0083	7.9	6.2	0.2	18	44	612	638	610	642	0.83

Sequence Information

Coding Sequence: atggcccgtcacACAGGAGAAAAGCCCCATCagtgtcctcactgtgattataaatctgTTACTTCTGAAGCAAGGAAAAGTCATATTATGGCCCGTCACACAGGTGAGAAACCCCATCAATGTCcttactgtgattataaatcagtaagaTCTAAAAATCTGGAAAAACATGTAATGGACCGTCACACAAGTGAGAAGCCCtatcaatgtcctcactgtgattataaatcagtagaaTCTAAAAATCTGGAAAAACATGTAATGTCCAGTCACATAAGTGAGAAGCCATGTCAATGTCcttactgtgattataaatcagttcagTCTATAAGcatgaaaaaacatattatggCCCGCCACACAGGTGAGAAGCCCTATCAGTGCCcttactgtgattataaatcagtccAATTTGTAAGTATGAAAAGTCATATTATGGCTCATCACACAGGTGAGAAGCCCTATCAGTGTCcttactgtgattataaatcagtccAATTTGTAAGTATGAAAAGTCATATTATGGCCCGTCACACAGGTGAGAAGCCCCATCAATGTCcttactgtgattataaatcagaccaatctgtaaatatgaaaaatcatattatggcccgtcacacaggtgagaagccccatcaatgtcctcactgtgattataaatcagctCAATCTGGAGgtttgaaaaatcatataatggcccatcacacaggtgagaagccccatcaatgtcctcactgtgattataaatcagtaatatctggaaatataaaaagacaTATAATGAGCCATCACACAGGTGAGAAGCCCCATCAATGTCcttactgtgattataaatcagtaaccTCTGGAtgtttgaaaattcatattatgaCCCGTCACACAGGTGACAGGCCCCgtcaatgtcctcactgtgattataaatcagttagCCTGCAACGTATGAAAAGTCATATAATGGCTCTTCACACAGGTGAGAAGCCCCATCagtgtcctcactgtgattataaatcattaagacctagaaatatgaaaattcatataatgGCCTATCACACAGGTGAGAAGCCCCATCAGTGTCcttactgtgattataaatcagtagaaTCTGTAAGTATGAAAGGTCATGTAATGGCCCGTCACACAGCTGAGAAGCCCCATCAGTGTCcttactgtgattataaatcagtccAATCTGGAAGTATGAAAATCCACATAATGGCTCGTCACACAGGTGAAAAGccccatcaatgtcctcattgtgattataaatcagtaagaTCTGGAAATATGAAAAGTCATATAAAGGCTAATCACACAGGTGAAAAGTCCtatcaatgtcctcactgtgattttAAATCAGTAAGATCTGATAGTATGAAAATCCACATAATGGCTCGTCACACAGGTGAAAAGCcccatcaatgtcctcactgtgattataaatcagccCGATCTGGAGgtttgaaaaatcatataatggcccgtcacACAGGTGAGAAGCCCCATCAGTGTCcttactgtgattataaatcagtaacctctctaaatttgaaaaatcatataatgggCCATCACACAGGTGAGAAGACCCAccaatgtcctcactgtgattataaatcagtagaaTCTAGAAGTATGAAAAGACATATAATGGCTCGTCACACAGGTGAGAAGTCCtatcaatgtcctcactgtgattataaatcagtaagatctgaaaatatgaaaagtcaTATTATGAACCATCACACAGGTGAGAAGCCCCATCAGTGTccttattgtgattataaatcagtccAAAATGGAAGTATGAAAAGACACATAATAGCCCGTCACACAAGTGAAAAGACCCATGAATGTCCTCACTGTGGTTATAAATCAGTTAGATCTGGAAATATGAAAAGACATATTATGACCCATAATaatgatgagaataaaaaaaaatga
Protein Sequence: MARHTGEKPHQCPHCDYKSVTSEARKSHIMARHTGEKPHQCPYCDYKSVRSKNLEKHVMDRHTSEKPYQCPHCDYKSVESKNLEKHVMSSHISEKPCQCPYCDYKSVQSISMKKHIMARHTGEKPYQCPYCDYKSVQFVSMKSHIMAHHTGEKPYQCPYCDYKSVQFVSMKSHIMARHTGEKPHQCPYCDYKSDQSVNMKNHIMARHTGEKPHQCPHCDYKSAQSGGLKNHIMAHHTGEKPHQCPHCDYKSVISGNIKRHIMSHHTGEKPHQCPYCDYKSVTSGCLKIHIMTRHTGDRPRQCPHCDYKSVSLQRMKSHIMALHTGEKPHQCPHCDYKSLRPRNMKIHIMAYHTGEKPHQCPYCDYKSVESVSMKGHVMARHTAEKPHQCPYCDYKSVQSGSMKIHIMARHTGEKPHQCPHCDYKSVRSGNMKSHIKANHTGEKSYQCPHCDFKSVRSDSMKIHIMARHTGEKPHQCPHCDYKSARSGGLKNHIMARHTGEKPHQCPYCDYKSVTSLNLKNHIMGHHTGEKTHQCPHCDYKSVESRSMKRHIMARHTGEKSYQCPHCDYKSVRSENMKSHIMNHHTGEKPHQCPYCDYKSVQNGSMKRHIIARHTSEKTHECPHCGYKSVRSGNMKRHIMTHNNDENKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00764007;
90% Identity: iTF_00764007;
80% Identity: iTF_00764007;