Hhal011662.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:5414-8639[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.01 0.4 10.7 2.1 1 23 10 33 10 33 0.95 2 22 7.5e-05 0.003 17.4 1.8 1 23 39 62 39 62 0.94 3 22 7.7e-05 0.0031 17.4 1.3 1 23 68 91 68 91 0.97 4 22 0.0023 0.09 12.8 1.6 2 23 98 120 97 120 0.94 5 22 0.0014 0.055 13.5 1.4 1 23 126 148 126 149 0.96 6 22 0.0019 0.075 13.0 0.5 1 23 155 178 155 178 0.95 7 22 0.00043 0.017 15.0 1.2 1 23 184 207 184 207 0.95 8 22 0.00022 0.0089 15.9 2.8 1 23 213 235 213 236 0.95 9 22 0.0045 0.18 11.8 4.0 1 23 242 264 242 265 0.95 10 22 0.00021 0.0082 16.1 3.1 1 23 271 294 271 294 0.98 11 22 0.081 3.2 7.9 0.9 2 23 301 323 301 323 0.94 12 22 0.027 1.1 9.4 2.3 1 23 329 352 329 352 0.93 13 22 0.08 3.2 7.9 0.5 1 23 358 381 358 381 0.90 14 22 0.00065 0.026 14.5 0.7 1 23 387 410 387 410 0.95 15 22 0.00031 0.012 15.5 2.7 1 23 416 439 416 439 0.95 16 22 0.00031 0.012 15.5 1.0 1 23 445 468 445 468 0.96 17 22 0.00015 0.0058 16.5 1.5 1 23 474 497 474 497 0.95 18 22 0.00017 0.0068 16.3 2.7 1 23 503 525 503 526 0.95 19 22 0.0048 0.19 11.7 2.9 1 23 532 555 532 555 0.95 20 22 8.8e-05 0.0035 17.2 3.7 1 23 561 583 561 584 0.96 21 22 0.00033 0.013 15.4 0.9 1 23 590 613 590 613 0.94 22 22 9.5e-06 0.00038 20.3 2.7 1 23 619 641 619 641 0.98
Sequence Information
- Coding Sequence
- atggcccgtcacACAGGAGAAAAGCCCCATCagtgtcctcactgtgattataaatctgTTACTTCTGAAGCAAGGAAAAGTCATATTATGGCCCGTCACACAGGTGAGAAACCCCATCAATGTCcttactgtgattataaatcagtaagaTCTAAAAATCTGGAAAAACATGTAATGGACCGTCACACAAGTGAGAAGCCCtatcaatgtcctcactgtgattataaatcagtagaaTCTAAAAATCTGGAAAAACATGTAATGTCCAGTCACATAAGTGAGAAGCCATGTCAATGTCcttactgtgattataaatcagttcagTCTATAAGcatgaaaaaacatattatggCCCGCCACACAGGTGAGAAGCCCTATCAGTGCCcttactgtgattataaatcagtccAATTTGTAAGTATGAAAAGTCATATTATGGCTCATCACACAGGTGAGAAGCCCTATCAGTGTCcttactgtgattataaatcagtccAATTTGTAAGTATGAAAAGTCATATTATGGCCCGTCACACAGGTGAGAAGCCCCATCAATGTCcttactgtgattataaatcagaccaatctgtaaatatgaaaaatcatattatggcccgtcacacaggtgagaagccccatcaatgtcctcactgtgattataaatcagctCAATCTGGAGgtttgaaaaatcatataatggcccatcacacaggtgagaagccccatcaatgtcctcactgtgattataaatcagtaatatctggaaatataaaaagacaTATAATGAGCCATCACACAGGTGAGAAGCCCCATCAATGTCcttactgtgattataaatcagtaaccTCTGGAtgtttgaaaattcatattatgaCCCGTCACACAGGTGACAGGCCCCgtcaatgtcctcactgtgattataaatcagttagCCTGCAACGTATGAAAAGTCATATAATGGCTCTTCACACAGGTGAGAAGCCCCATCagtgtcctcactgtgattataaatcattaagacctagaaatatgaaaattcatataatgGCCTATCACACAGGTGAGAAGCCCCATCAGTGTCcttactgtgattataaatcagtagaaTCTGTAAGTATGAAAGGTCATGTAATGGCCCGTCACACAGCTGAGAAGCCCCATCAGTGTCcttactgtgattataaatcagtccAATCTGGAAGTATGAAAATCCACATAATGGCTCGTCACACAGGTGAAAAGccccatcaatgtcctcattgtgattataaatcagtaagaTCTGGAAATATGAAAAGTCATATAAAGGCTAATCACACAGGTGAAAAGTCCtatcaatgtcctcactgtgattttAAATCAGTAAGATCTGATAGTATGAAAATCCACATAATGGCTCGTCACACAGGTGAAAAGCcccatcaatgtcctcactgtgattataaatcagccCGATCTGGAGgtttgaaaaatcatataatggcccgtcacACAGGTGAGAAGCCCCATCAGTGTCcttactgtgattataaatcagtaacctctctaaatttgaaaaatcatataatgggCCATCACACAGGTGAGAAGACCCAccaatgtcctcactgtgattataaatcagtagaaTCTAGAAGTATGAAAAGACATATAATGGCTCGTCACACAGGTGAGAAGTCCtatcaatgtcctcactgtgattataaatcagtaagatctgaaaatatgaaaagtcaTATTATGAACCATCACACAGGTGAGAAGCCCCATCAGTGTccttattgtgattataaatcagtccAAAATGGAAGTATGAAAAGACACATAATAGCCCGTCACACAAGTGAAAAGACCCATGAATGTCCTCACTGTGGTTATAAATCAGTTAGATCTGGAAATATGAAAAGACATATTATGACCCATAATaatgatgagaataaaaaaaaatga
- Protein Sequence
- MARHTGEKPHQCPHCDYKSVTSEARKSHIMARHTGEKPHQCPYCDYKSVRSKNLEKHVMDRHTSEKPYQCPHCDYKSVESKNLEKHVMSSHISEKPCQCPYCDYKSVQSISMKKHIMARHTGEKPYQCPYCDYKSVQFVSMKSHIMAHHTGEKPYQCPYCDYKSVQFVSMKSHIMARHTGEKPHQCPYCDYKSDQSVNMKNHIMARHTGEKPHQCPHCDYKSAQSGGLKNHIMAHHTGEKPHQCPHCDYKSVISGNIKRHIMSHHTGEKPHQCPYCDYKSVTSGCLKIHIMTRHTGDRPRQCPHCDYKSVSLQRMKSHIMALHTGEKPHQCPHCDYKSLRPRNMKIHIMAYHTGEKPHQCPYCDYKSVESVSMKGHVMARHTAEKPHQCPYCDYKSVQSGSMKIHIMARHTGEKPHQCPHCDYKSVRSGNMKSHIKANHTGEKSYQCPHCDFKSVRSDSMKIHIMARHTGEKPHQCPHCDYKSARSGGLKNHIMARHTGEKPHQCPYCDYKSVTSLNLKNHIMGHHTGEKTHQCPHCDYKSVESRSMKRHIMARHTGEKSYQCPHCDYKSVRSENMKSHIMNHHTGEKPHQCPYCDYKSVQNGSMKRHIIARHTSEKTHECPHCGYKSVRSGNMKRHIMTHNNDENKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764329;
- 90% Identity
- iTF_00764329;
- 80% Identity
- iTF_00764329;