Hhal008010.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:20475-40531[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.05 47 3.7 0.1 21 51 128 158 123 161 0.75 2 22 0.11 1.1e+02 2.6 0.1 26 48 161 183 155 186 0.87 3 22 0.0016 1.6 8.4 0.2 22 47 244 269 226 273 0.87 4 22 0.0089 8.5 6.1 0.4 22 46 273 297 268 304 0.85 5 22 0.26 2.5e+02 1.4 0.1 21 44 301 324 296 330 0.81 6 22 8e-05 0.077 12.6 0.1 21 45 330 354 326 360 0.89 7 22 0.0026 2.5 7.8 0.1 22 52 360 391 354 393 0.80 8 22 0.13 1.3e+02 2.3 0.1 23 45 390 412 384 417 0.86 9 22 0.017 16 5.2 0.2 21 48 417 444 412 446 0.87 10 22 0.0013 1.3 8.7 1.0 19 47 444 472 441 479 0.86 11 22 1.2 1.2e+03 -0.8 0.0 22 44 476 498 474 503 0.82 12 22 4.1e-05 0.039 13.6 0.2 20 45 503 528 492 533 0.85 13 22 0.12 1.1e+02 2.5 0.2 22 45 534 557 531 565 0.84 14 22 1.4 1.3e+03 -0.9 0.1 22 48 563 589 557 592 0.78 15 22 0.01 9.8 5.9 0.6 22 45 592 615 587 619 0.87 16 22 6.8e-05 0.065 12.9 0.3 21 48 620 647 615 654 0.83 17 22 0.7 6.7e+02 0.0 0.1 22 44 650 672 646 678 0.86 18 22 0.0071 6.8 6.4 0.1 21 45 678 702 675 707 0.89 19 22 0.25 2.4e+02 1.4 0.1 21 44 707 730 702 736 0.83 20 22 0.017 16 5.2 0.2 21 47 736 762 730 765 0.86 21 22 0.026 25 4.6 0.6 20 45 764 789 760 796 0.85 22 22 0.014 14 5.4 0.3 22 45 824 847 819 855 0.85
Sequence Information
- Coding Sequence
- ATGGATCGAATGGGTATATATAATTGTGTttctataaaagaagaaatacaaGATGAAACTGTGCCAAATTGTATAAGCAACTCTGGCATTTcagttaaagaagaaataactgACTCGAATGAACTCTTTCTTCCCTTGACTGATATTAAAGAAGAGGAAACACTGGAAATCTATgatgATATAAGTAACCCTGGTATTtcaattaaagaagaaataagtgATGAAACTGATCCCTCCGtttctCTTACTGATATTACTGAAAAGGAAATACCAGAAATCTCTAATGgaaccAATGACTATCTATGCCAGACAAAGAAGATGAAACAGTATGGTTTGGAATCTGCAGTCATCAATTTGAAGGAATTTAAAATGTCTAATATAACTGAGAAGCCTCTTGAATGTCCTTATTGTGAATTTACAGTTGTAGAAAAAAGTCTTATAGTAAGACATATAATGGCTCATCATACAACTAAGAAGTACaagtgtcctcattgtgaatatgtAGCAACAGTATCTACTAacttaaaacttcatattattaccAATCATACAAATAACAATCTCTATCAATGTcatcattgtgaatataaagcagtaaaaaaatgcattattaagCAACACCTAATATCACTTCATAGTGGTGATAGGCATCATAAGTGTCCCCATTGTCCCTATAAAGCAACCCGAATTGCTCATTTGAAAAGACATATTACGTCCCTTCATACTGATGCGAAGCCTCATAAGTGTCCTTATTGTGACTATAGAGCAACACAAAGTGGTAATATGAAAAGACATATTATGTCCCTTCATATTGGtgatagaccttataattgtcctcattgtgattataaagcaACCCAAAGTGCTCATTTAAAAAGACACATAATGTCACTGCATACTGATGAGAAGCCTCAtaagtgtcctcattgtgactaTAAAGCAACACAATACAGTACtttaaaaacacatattatAACCCTTCATACTGATGAGAGGCCTTATAAGTGTCCACTTTGTGACTATAAAGCAACCCAAAGTGGTAATTTGAAAAGACATATAATGTCCCTTCATACTGAAGAGAGGTCTCATAAGTGTCCTTATTGTCATTATGAAGCAACACAAAGTGGCAATTTGAAGACACATATAATGTCCCTTCATACTGATGCGAAGCCTCAtaagtgtcctcattgtgattataaagcgACACAAAGTAGTCATTTGAAAAGTCATATAATGTCCCTTCACACATATGAGAGGCCTCAtaagtgtcctcattgtgattataaagggacacaaattcataatttaaaaaaacatataatgtccCATCATACTAATGAAAGACCTCATAAATGTCCTCATTGTAACTATAAAGCAACACAAAGTGACCATTTGAAAAGACATATAATGGCCCTTCATACTGGTGATAGGCCTCataaatgtcctcattgtgattataaagcaACACAACTTGGTACTTTGAAATCACATTTAATGTCCCTCCATAGTAATGAAAAGCCTCTtaaatgtcctcattgtgattacaAAGCATCTCAAATTCGTAATCTGAAAAGACATTTATTGGCACTTCATTCTGGCGAGGAGGCTCATAAATGTCCATATTGTGATTATAAAGCAAAACAAAGTGCTTGtttgaaaaatcatattatgTCCCTTCATACTGGAGATAGACCTCAtaagtgtcctcattgtgattataaagcaAACAAAGCTGCTACTTTGAAGACACATGTAATGGCACACCACACTGGTGATAGGCCACAtaagtgtcctcattgtgactaTAAAGCAACCCAAAGTGCTCATTTGAAAAGACATATAATGTCCCTTCATACTAATGAAAAACCTCTtaagtgtcctcattgtgattataaagcaTCACAAATTCGTAACTTGAAGAGACATATAATGACCCTCCATACTGTAGAGAAACCTCATAAGTGTTCTCATTGTGActtcaaaacaaaactaattcgtaatttgaaaatacatataataaccCTTCATgctggtgagaagcctcataaTTGTccttattgtgattataaagcAAAACAGAGtgttcatttgaaaaatcatataatgtcTCTTCATACTGGTGAGAGGCCTCATaaatgtcctcactgtgattacAAAGCAACACAAGTCGCTAGTTTGAAAACTCATATAATGTCCCTTCATACTGGTGAAAGGCCTCAtaagtgtcctcattgtgattacaAAGCAACACAAAGtggttatttgaaaaaacatataatatctcATCATACACATGAGAAGCCTCATAAGTGTCCTTATTGCGATTATAATGCAACTCAAATTCGTcatttgaaaattcatataatgtCCATTCATACTGGTGATAGACCTTATAAATGCTCTCAGTGTGCTTATGAAGCAACTCAAACTGCTCtattgaaaaaacatataatggccATGCATACTGGAGATAGGCCTCATATATGTccttattgtgattataaagcAACACAAAGTGCTCATTTGAAAAAACATATGTCTCGTCATACTGTTGATAGACCacatttctaa
- Protein Sequence
- MDRMGIYNCVSIKEEIQDETVPNCISNSGISVKEEITDSNELFLPLTDIKEEETLEIYDDISNPGISIKEEISDETDPSVSLTDITEKEIPEISNGTNDYLCQTKKMKQYGLESAVINLKEFKMSNITEKPLECPYCEFTVVEKSLIVRHIMAHHTTKKYKCPHCEYVATVSTNLKLHIITNHTNNNLYQCHHCEYKAVKKCIIKQHLISLHSGDRHHKCPHCPYKATRIAHLKRHITSLHTDAKPHKCPYCDYRATQSGNMKRHIMSLHIGDRPYNCPHCDYKATQSAHLKRHIMSLHTDEKPHKCPHCDYKATQYSTLKTHIITLHTDERPYKCPLCDYKATQSGNLKRHIMSLHTEERSHKCPYCHYEATQSGNLKTHIMSLHTDAKPHKCPHCDYKATQSSHLKSHIMSLHTYERPHKCPHCDYKGTQIHNLKKHIMSHHTNERPHKCPHCNYKATQSDHLKRHIMALHTGDRPHKCPHCDYKATQLGTLKSHLMSLHSNEKPLKCPHCDYKASQIRNLKRHLLALHSGEEAHKCPYCDYKAKQSACLKNHIMSLHTGDRPHKCPHCDYKANKAATLKTHVMAHHTGDRPHKCPHCDYKATQSAHLKRHIMSLHTNEKPLKCPHCDYKASQIRNLKRHIMTLHTVEKPHKCSHCDFKTKLIRNLKIHIITLHAGEKPHNCPYCDYKAKQSVHLKNHIMSLHTGERPHKCPHCDYKATQVASLKTHIMSLHTGERPHKCPHCDYKATQSGYLKKHIISHHTHEKPHKCPYCDYNATQIRHLKIHIMSIHTGDRPYKCSQCAYEATQTALLKKHIMAMHTGDRPHICPYCDYKATQSAHLKKHMSRHTVDRPHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764001;
- 90% Identity
- iTF_00764001;
- 80% Identity
- iTF_00764001;