Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052169.1:414838-419015[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.6 7e+03 -3.2 0.1 28 40 81 93 81 96 0.64

2 5 5.6e-13 1.1e-09 37.8 0.0 1 39 315 354 315 358 0.90

3 5 1.7e-12 3.3e-09 36.3 0.1 2 39 370 407 369 410 0.94

4 5 6.2e-19 1.2e-15 56.9 0.0 2 45 425 469 424 469 0.97

5 5 7.1e-19 1.4e-15 56.7 0.1 1 42 476 518 476 519 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.6	7e+03	-3.2	0.1	28	40	81	93	81	96	0.64
2	5	5.6e-13	1.1e-09	37.8	0.0	1	39	315	354	315	358	0.90
3	5	1.7e-12	3.3e-09	36.3	0.1	2	39	370	407	369	410	0.94
4	5	6.2e-19	1.2e-15	56.9	0.0	2	45	425	469	424	469	0.97
5	5	7.1e-19	1.4e-15	56.7	0.1	1	42	476	518	476	519	0.97

Sequence Information

Coding Sequence: ATGGTGTACATAACATCGAATTATCAACAGCTCGCGCGACCTTTCGTTGGTCGCAATCGTCAGCGTGTCAGACTTTCACGAAGAGAGCAAGCTTACAGGAGGTTTGTCGTTTTGTTACAGTCACTATTGAAAACGGCTGATCAGCTGAAGATCAAGGGCCTCTGCGAGGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTGAGTCTGAGCTCGCCGCCACGGGAACCAGGCACTCCCAGGATAAATTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCTACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAGAATCACAGAGACTGGCAGACCGAAGATGAAGATTGTACGGAGGGCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACCAATAATAATAACAATAACAACAATAACAACGGTAACGGTGCGAATAACAATAATAACGGTGACATGTTCTGTCATACAGGTCTCGGACACTATGGACACCACCCGGATCCTGGGGAAGTCGACCTACCCCCAGAGACCCAACCCACCCCACCTAGCGCCACGTTGGTCGGCACCACGATCACCCACCTGAGGGATCCGGATCACCATTCCACAGAGATTCAGAACTGTGACAGTGTCAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCGGACCGGGCGAGTGTCAGTTCGAAGAACGCAGCAGACAGTGACAACATGATGATGATCACGCCGGAGCTGCTCGGTTTAATGCCCTCTGGAAGTTCCGTCCACTCGGATTCCGGCGAAAACAACTCGAGAGGCCATTCTGGACAGTCGAGTTCTCACCATCACGGCTCGAAATCGTGGACCCAAGAAGACATGGACGCCGCTTTGGAAGCGTTGAGGAACCATGACATGAGCTTGACGAAAGCCTCCGCAACCTTCGGCATACCATCGACGACGTTGTGGCAAAGAGCGCACCGGTTAGGCATAGACACGCCAAAAAAGGATGGACCAACGAAGTCGTGGAGCGACGAAAGTCTGAACAACGCCCTCGAAGCGCTGAGAACTGGCACGATCTCGGCCAACAAGGCGTCGAAAGCGTTCGGTATACCTTCGAGCACGTTGTACAAAATCGCGAGGAGGGAAGGCATCAGATTGGCCGCGCCGTTTAACGCCAGTCCTACCACTTGGTCGCCCGCCGATCTGGACCGCGCTTTAGAAGCAATAAGGTCTGGCCAAACGTCCGTGCAGAGAGCTTCTACTGAATTCGGCATTCCAACAGGGACCCTGTACGGTAGATGCAAGAGGGAAGGAATCGAGTTGAGCAGAAGTAATCCCACGCCATGGAGCGAGGATGCCATGACAGAAGCGCTCGAAGCCGTCAGATTGGGTCATATGAGCATCAATCAGGCAGCCATTCACTACAATCTGCCCTACTCGTCGCTGTACGGTCGGTTCAAGAGGGGGAAGTACGAAGAGCCGGCAGTCGGTGATCTGTCGCAAGACGGGAGCAATCCACATTTCCATCAAAGTCCGAATCAAAATCATTCGTCCGCCGTTCCGGATCAAATGCCCTACCAAGGCAGCTGA
Protein Sequence: MVYITSNYQQLARPFVGRNRQRVRLSRREQAYRRFVVLLQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEGTTATVVLETCQRTNNNNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNPHFHQSPNQNHSSAVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00306165;
80% Identity: -