Basic Information

Gene Symbol
MBD-R2
Assembly
GCA_028454245.1
Location
CM052111.1:1839383-1847087[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.4e-17 5.3e-14 51.7 0.2 6 69 544 607 539 615 0.91

Sequence Information

Coding Sequence
ATGAAGCGGCGGCGTATAACGCGGTCGCGTGGTAAAGGAATACCGCCTGTGGGGGCGATGAGAATGGCGCGCAAATGTTGCGTGCGTAGCTGTGAAGCTGATGTGCGAGAAGCGCGTGCTAAAGGGTTTCCACTTCATAAATTCCCGAAGGAAATTGGCTTGAGAAGCAGGTGGTTGGCCAGTGGTGGTTTCGAGGCGAGTTTTAAACCTTCGCCGGGTCAAATTGTCTGCCACAGACATTTTAAACGAGCTGATTACGAAGCCGCCAGGGGACAGAAATTACTTCTACGAAAAGGCAGTGTTCCATCGGTTTTTGCGGATTATGATAATCATCCAGATCCTGTAATCATGTCTGTAAAGTCATCAACTTCTTATGCACAAGAGGATTTGGATCTCATTAATTCTGAAATTTTAAATTTAGAACAATCTATATCTCCATTATTATCTGAAGCAAGAACTCCTAAATCCGACAGTTGCGGAGAAACATGTTCGTCTAGACCTGCATCATCAGCCGATTCTCTTAATATGACAGATTCAACGGAAGTAGTTGATAATGGATTTAAAACATTACCCGTAAAAAGCGAAACTATGCCTCCTACAAAACAAGAGATCAATGAGAATTTAGAATTAGAAGTAAATACTATGGCTGCGCAATTAGGAATTGTAGAATCGGATGTGACAATAAAGAATATCCAGAAAGACTTAATTATTAAGGAGGAACTAAAGAATATTAAAATAGATGATGATAAAACATTTGACAAACCGGAAGAATTAAAAGCAAAAGTGTTAAATCGAGATGGATTGAAATTTTTTCCTGGAGCCAAATTAGAAGCGAAAGATTTCAATGACAAGTGGTATTCTGCTAAAGTTGTTGAAACTGATTGGGACGAAAGGGAAGTTTTAATACATTTTGATAAATGGAGTTCAAGATTTGACGAATGGATACCTATGGATAGCTCTAGATTACGTGTGTTACAAACACAGTCAAACGAACAAACTTGGGACCTGCCATCTCTGGAAACGAAAATGAAAGACTTTTCAGTTGGTGAACGGATACTTGCTACGTGGGCTGACGGGAGAAAATATCCAGCGAAAGTAAATGCAGTGTTAGGAAATGATAGATACGATGTTCTCTTTGACGATGGATACGCAAAAACCGTTAAATCATCGAAAATGACAAAAATCGCTACAACATCCACAAAGCAAACTGTTCAAAGCGAAGGCTATATAGGAAGTAAACAAGAAAGAAGGGATAAGAAGCGAAAGCATATAGTGATGGAGCTGTTCCATACGCATTCTAGAAAGCGATCTAAAAATGAAGCAGATAAATTGGTGAAAAAGGAAAGTCCGGCAATGAATGGAAGTGGAGGAGATTGTCTGCCGGATAATAAAATTGATTTAGATGGTACTTTGTTTGGACCTTGTTATGATCCTGGGACAGATTTATTACGAGGATTTGATACTAACATATCAAAAACGAGACCGTACGCAAAGAAAAGTAAGAAAGAAATGTTTAAGAATGATGTGGACCAAGAAGAAGATGTAGGGCCTGAATGGATAGATGGCGAACCACAAGGAACTGAATCATATATTGTAGATGGAAATGATGGACCACGACGTTCAATAATAGTGGCAGATAAAAGACTACCACCTGGTTGGCAGAAACATTTCACTCAAAGAAAAGCAGGTACATCTGCTGGAAAATGGGATGTCTTGTTTCTTCATAAATCAAGTGGAAAGAAATTTAGATCAAGAAATGATATTAGAGCATTCATGGAAAATCAGGGGCAATCTGATTTCGATCCAGAAAAATTCGACTTTTGTATTCATCGAAAAAAGAAAAGCCATGGACCGAAAATAAAGCAAGAAATTGTTACAGACGCGCCAAAGAAAATTAAGACTTTATTGCCTAAAACGAAAGCAATACCATTAACCGATACATTACTTATACCTGCAACTACACCAGTTACAACGATAGTGCCTACGCCAGCAACATCTATTGCCGATGGTGCTGTTTTTATTGGAGGACTTCGCGTAGAAATGGAGGACAGCGCTTACAAATGTCCGAAACAAGGGTGCAATAAAACTTTTAGAAAGGAAAATCTTTTGCAAATGCACATAAAACATTATCACCCAGAATATTCAAAATTTTTGGGATCAACTCCAAACGTTGCAGACTTAGCTTATGCAAGAACAATTGGAGAATCGATTGAAGATATTATTCCTAGAAAATCAAATAATGTGTTAGAAAAATATAATAAATTAGGGAAGAAGAAAACTGTTCAAGATAAACCTTTGTATGCGATGTCACCGACTGCATCAAATTCTGCTCAACCCACGTCGCCATCGATAGCGATGCCAACAGTCTCCGAAGTCGAGGACGAAATCGACCAAATGGAACAGTCTAATGAAACGCAAGCTGAAGATGTTAAAGTAGAAAGAATGTCTCCAATTTCCAGTCGCAGTGTAGATATGGACGATGAAACTGAGAAGAAACGAGAGGAGACATGTGCAATGTCACCGGGAACACTGTTCGATCTAAAGGTCAGGGAGGAGAAAACACCCAGTGGTATTAAAACTCTTCTTCCAGTGAGGCCAACTACGTCATCAGAAGTACAGAGAATTGATAGGTCGAAGTCTTTAGACGAAGGCATCCATATTGACAAAATGAAGGGTCAAAGGAAACGGCAGTTATCGGAGTATAGCTCTGACGTTCCGAGCAGGGGTAAAAGACGTCACGGTATTCAAGAAATTACGGACGAATACGGTGATTTGGATGAAAGTGCAGTGGACGCTGAAGGTCCTACTACACTTATGTATAGATATAGCCGTCGAAAATCAGATTCAAGAAGTGACGAAAATAGTCAAAGCAGTCAACTAAACGATTCTCATCTCGAAAAAGCTGATCCCCTGAAAGGGGATATTACTAAAAGAGATACAAATAATGATGGTGAAGAAAACGAAGGAGTTATGATGATGATTAATGGTGAAATGATAAAAGTGGAACAACTTCGCAGAGAAGAAATAATAAATTGTACATGTGGATACATGGAAGAAGATGGTTTAATGATACAATGCGACCTTTGTTTATGTTGGCAACATGGTCATTGCAACGCGATCGAAAAGGAAAAGGATGTGCCCGAAAAATATATTTGTTATATTTGTCAGAATCCATACCGACAACGACCGTCGAAGAAGTATATCCACGATCAGGATTGGATAAAGGAGGGCAAATTGCCAACATTATCTAATGGAACAAGGAATCAATATGCGGTTAATCAGCGAACAGCTATGTTGAAACGTTCTTACGATTTAGTCGCTGCACTTTTGCAGATACAGCAAGTGCTGCATAGTTTAAGAATAAAGATTAATGTAGCTCAAAAGAAAGATCATCCAAAATTGTATCTATGGGCGAAGAATTGGGAAAAGATTGAAATACAAAAGCCAGATATGACACCTGTACCAGTAATAGAAATTACAAAAGCAACAAACGATACTGTAGACATTGTAGACGATGTTTCACGTCGAATTGAAATCAAGATGGAAACCAAATTTACTTTGAAGGAGGATCCTGATGAAAAATCGATAGCCTCGGATTCGGAGTTGATGAAAATTTTGGAAGAAGATAATACGATTGCAGAAGAAGCTAAACTAGCTTGCAAAAAAGAAGATTCGGCGAATCAAAATAAAAGTCACATCCTTCTTGATGCTCTCACGAAAAACCCTAGCCCTGAAGGAAAATTCAAAACTTCAACAACTTCGGATACGAAAACGGTTACAGATCTACTATCGAATCAAACAGCTGAAGATGATATATCTACGTCAACAATGCCAGCACACGAGATGCAGGATGAAAATGGACACGATTTATCAACACCATTACAACCTTTTATACCACAACCAGAAGCACCTATAGATCCAGGAGAATGTCGAATGCGGTTACTGGAACATATTGAACATTTTGAAAATCACATAGATGCTAGATTAACATCTATTGAGGCTCAAGTTTGCGCTTTGGAAGCTATGGATCCGGAAGATATGATACCTAGTCAAGACGTTCAGCCTCGAACTAAACAAACAATCCAAATGCTTCTCCGAGATTTAAACACAGTGCGAAAATTAGCAGCTTTATGTTAG
Protein Sequence
MKRRRITRSRGKGIPPVGAMRMARKCCVRSCEADVREARAKGFPLHKFPKEIGLRSRWLASGGFEASFKPSPGQIVCHRHFKRADYEAARGQKLLLRKGSVPSVFADYDNHPDPVIMSVKSSTSYAQEDLDLINSEILNLEQSISPLLSEARTPKSDSCGETCSSRPASSADSLNMTDSTEVVDNGFKTLPVKSETMPPTKQEINENLELEVNTMAAQLGIVESDVTIKNIQKDLIIKEELKNIKIDDDKTFDKPEELKAKVLNRDGLKFFPGAKLEAKDFNDKWYSAKVVETDWDEREVLIHFDKWSSRFDEWIPMDSSRLRVLQTQSNEQTWDLPSLETKMKDFSVGERILATWADGRKYPAKVNAVLGNDRYDVLFDDGYAKTVKSSKMTKIATTSTKQTVQSEGYIGSKQERRDKKRKHIVMELFHTHSRKRSKNEADKLVKKESPAMNGSGGDCLPDNKIDLDGTLFGPCYDPGTDLLRGFDTNISKTRPYAKKSKKEMFKNDVDQEEDVGPEWIDGEPQGTESYIVDGNDGPRRSIIVADKRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRSRNDIRAFMENQGQSDFDPEKFDFCIHRKKKSHGPKIKQEIVTDAPKKIKTLLPKTKAIPLTDTLLIPATTPVTTIVPTPATSIADGAVFIGGLRVEMEDSAYKCPKQGCNKTFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESIEDIIPRKSNNVLEKYNKLGKKKTVQDKPLYAMSPTASNSAQPTSPSIAMPTVSEVEDEIDQMEQSNETQAEDVKVERMSPISSRSVDMDDETEKKREETCAMSPGTLFDLKVREEKTPSGIKTLLPVRPTTSSEVQRIDRSKSLDEGIHIDKMKGQRKRQLSEYSSDVPSRGKRRHGIQEITDEYGDLDESAVDAEGPTTLMYRYSRRKSDSRSDENSQSSQLNDSHLEKADPLKGDITKRDTNNDGEENEGVMMMINGEMIKVEQLRREEIINCTCGYMEEDGLMIQCDLCLCWQHGHCNAIEKEKDVPEKYICYICQNPYRQRPSKKYIHDQDWIKEGKLPTLSNGTRNQYAVNQRTAMLKRSYDLVAALLQIQQVLHSLRIKINVAQKKDHPKLYLWAKNWEKIEIQKPDMTPVPVIEITKATNDTVDIVDDVSRRIEIKMETKFTLKEDPDEKSIASDSELMKILEEDNTIAEEAKLACKKEDSANQNKSHILLDALTKNPSPEGKFKTSTTSDTKTVTDLLSNQTAEDDISTSTMPAHEMQDENGHDLSTPLQPFIPQPEAPIDPGECRMRLLEHIEHFENHIDARLTSIEAQVCALEAMDPEDMIPSQDVQPRTKQTIQMLLRDLNTVRKLAALC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00866702;
90% Identity
iTF_00762600;
80% Identity
iTF_00762600;