Hqua006275.1
Basic Information
- Insect
- Halictus quadricinctus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_028454245.1
- Location
- CM052117.1:1576431-1578729[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.6e-114 4.9e-110 367.6 35.7 1 300 29 327 29 327 0.97 2 3 0.003 56 2.9 3.1 122 171 327 376 325 379 0.92 3 3 0.061 1.2e+03 -1.4 5.9 195 238 359 401 346 402 0.57
Sequence Information
- Coding Sequence
- ATGGAGGCTGCTATAGCTGGACGTAGGCGGACAGCCGCGAGACATTCGGCGGAGGATCAAGCTCTTGATCAGATAGCCAAGGAGGCAGAAGCTAGATTAGCTGCAAAGAGACAGGCAAGAGCCGAAGCAAGAGAAATACGAATGCGTGAACTAGAAAGACTACAAAAAGAGGCAGAAGAGAATGCGGATAGGGTTTATGACATGTGTTCTGCTGACGTAAATAGAACAATGAGAGTAACCCCAGATTCCGTAAGGACGTCGCGACTTCTTACGAATTCGAACAATTTTCAATCGAGTCGTAGGTCTTCTGAAGACTCTCTGGAAGATGCTGGCCTAAGTAGAGATCTAAGGTTAGAACTGAAAGAGTTTGAAGAGAAATTTAGGAAAGCTATGATAGCTAATGCTCAGTTAGACAATGAAAAGTCTTCTTACGCCTACCAAGTTGATTTGTTGAAAGACAAGTTGGAAGAATTAGAGGAAACGGTTGCACAACTTCGTAGGGAACTTCGAGAGAAGAATCGGGAATCGGAACAGTTGAAAAGAATCAGTCAGAGATTGAAAGAAGAGTTAGATATATGCCATGCACAATTAATAGATAGAGATACGCTTATACAAGAGAATGGTTTAGTTATTCTTGACGACGAGGAGAGTGAAAACGAAGATAACGATATTGAAAATGGCCCGCGTCCAAGACGAAGAGTACTAGTCAGTACAGAAGCAGCAGAATTGTTGCAAAATGCTGGAAAAGGTTCATTAGATGTTCGGCTGCGAAAATTTGCTTCGGAAAAGAAAGAATTACAGGACGAGATACGGCATTTAAGATTGGAATTGGAAGAGACCAGGAATCGCACCAGGTCCGAGAAATCACCTGGTTCGGTATTAGGTTGTTTGTCAGATTCCGAGGACGTGCAGCGAGAAGCGAATAAACTGTTAGCCGATTACAAGTTCAAGTTGCAGAAAGCAGAGCAGGATATGTCGACTTTACAAGCCACCGTAGCCAGGCTAGAGAGCCAAGTGATACGTTACAAGTCAGCCGCGGAAGCATCGGAGAAAGCGGAAGACGAATTGAAAGTTGAAAAGCGAAAACTTCAAAGAGAAGTCAGAGAGACCCAAGGTCGCGTCGAGGAATTAGAGACTGCGAATTCTCATTTACAGAGGCGACTAGACAAACTTAAAAACGCGAAATCGGCTTTGTTGAAGGAGCTTTGA
- Protein Sequence
- MEAAIAGRRRTAARHSAEDQALDQIAKEAEARLAAKRQARAEAREIRMRELERLQKEAEENADRVYDMCSADVNRTMRVTPDSVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETVAQLRRELREKNRESEQLKRISQRLKEELDICHAQLIDRDTLIQENGLVILDDEESENEDNDIENGPRPRRRVLVSTEAAELLQNAGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRTRSEKSPGSVLGCLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00966027;
- 80% Identity
- iTF_00862561;