Gfla027749.1
Basic Information
- Insect
- Gortyna flavago
- Gene Symbol
- -
- Assembly
- GCA_963669345.1
- Location
- OY770155.1:4410405-4412201[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.059 4.7 8.6 0.7 1 23 32 54 32 54 0.95 2 16 0.15 12 7.4 0.1 2 23 82 104 81 104 0.89 3 16 6.8e-05 0.0055 17.9 0.4 2 23 125 147 124 147 0.96 4 16 3.7e-05 0.003 18.7 2.8 1 23 152 174 152 175 0.96 5 16 9.7e-05 0.0078 17.4 0.5 1 23 179 202 179 202 0.95 6 16 0.077 6.2 8.2 0.3 2 23 205 227 204 227 0.95 7 16 0.017 1.4 10.3 0.1 2 19 233 250 232 253 0.94 8 16 0.00098 0.079 14.2 3.3 2 23 302 324 301 324 0.96 9 16 0.59 48 5.5 0.1 2 23 353 375 352 375 0.94 10 16 0.002 0.16 13.2 0.0 1 23 397 420 397 420 0.92 11 16 1.7e-05 0.0013 19.8 0.9 1 23 425 448 425 448 0.95 12 16 4e-05 0.0032 18.6 0.5 1 23 454 477 454 477 0.96 13 16 8.8e-05 0.0071 17.5 1.0 2 23 483 505 482 505 0.97 14 16 0.001 0.081 14.2 4.6 1 23 509 532 509 532 0.97 15 16 0.19 15 7.0 0.5 2 23 539 560 538 560 0.96 16 16 0.011 0.91 10.9 1.5 1 23 566 588 566 588 0.96
Sequence Information
- Coding Sequence
- ATGACAAAGCACAGTGCTAGTTATCTAAGGAGGAGAAATCTGCAAATATTGCTCAACAATACAACGTTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGCGGGGACGATACGACGACGCCCGATCGTCTCCGGAAACACACGAAAGGCCACGGACCTTGCAGTGATACCGACAGAGCTATACGATTAGTTAAATCAGCTGATATAGAAATCAAAATAGATGTATCCGATGTTTCGTGCGAGATTTGTTCAGAAACGTTCCCCTTTTTAGACGAAATTATTGACCATTTGATTTTTAAACACCAACTGCCTTATGCGAAGGACGTAGAGATGCTGTTATCATCATACAGACTGTTAGATCTTCAGTGTCTCCTTTGCGATAAAACGTTCAATTACTTACGTAAATTAATCAGCCATATGAATGTCGCTCATCCAAACAACAGTTTTGAGTGTGCCGaatgtaaaaaaacatttaataaaaagaggGATTTGGATTCGCACATAAGACTCCATCATAAGAAATGCTATTCTTGTACGAAATGCGATGGAACGTTCCCAACAAACTCCGCGTTACAAATTCACAGGTCTAACTCTCATTCTTCGACTTGTAACATCTGCTTCCAAGTGTTTGCTTCAGACGGCAAGCGATTAGCTCATCAGAAATCTGACCATGATTATAATCAGAGCCAATGTGGATTCTGCAATAAAGTTCTAACAACAAAACAAGCCTTTATAAGACATGCTGCAAATTGCGAACGTAAACCTCAAGAAGAAACTGTCATAATAGATGACGATGAAGACAAAAAAGTATCCGTCAAAGAAATCAGAAAAAGTTTAGCATGCATCTTTAACATGACAACCGCACTTCCTTTCAAATTCTTTATGAATAGGTTACGATGTTTCTATTGCACGAAAGACTTCACCTCATGCGAAGATTTAAAAGAACATACTTCGACAGAACATCCTCACTGCGATATATCCTTTAAATCTATGAGATTAAGGAACAGATATGACGGTGTCCAAATTAAAGTTGATACTTCTTCTTTGTCTTGTAGACTATGCCAAGTCACCTTGGAAGATTTGAACGATTTGATTGACCATTTGAGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTCGAGAGTAATCTGCAGCCGTTCAAACTGATTAAAGACAACTACCCTTGCCCCATTTGCGGGGAAGTCTACAGATATTTCGGCGTCCTACTCAAGCACGTTAGTGCGTCTCATAGTGGCAATAAACATATTTGCATGTACTGCGGCAAAGCGTTCAGAACTGACCCTAATCTTAGAGCTCATATTTCAAGGCGTCATAAAATCGCTGATAATCACAAGTGCGGAAACTGCGATCTAGTTTTTGGAACTAATAGTGCGTTAAGAAATCACCAAGGCACCGTTCACGGTACAAAATTAGTACAATGCTTTGAATGTTCAGAAAAATTCACCTCACAATATTCAATGCAACGACACTTAATCACCTCTCATGGTACGGGACATAAATGCACTTACTGTGATAAGTTATTTACTAAAAACTCTTTCATGGTCAACCACGTAAGGAGGTCTCATTTGAAAGAGAAAAATGTAGAATGTTCTGTGTGCTTTGAGAAATTTTTCGACGGTCAAAGGCTGAAAATGCATATGGTTAAACACGTTGGAGAAAGAAACTTTCATTGTGATATTTGTGGTAAAAAGTTCTTGTGGAAAAGGAATCTAAGGGGACATATGGCCTCCCATATCCGGAATGCGAATTCTAGACACGTTACCTAA
- Protein Sequence
- MTKHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTTTPDRLRKHTKGHGPCSDTDRAIRLVKSADIEIKIDVSDVSCEICSETFPFLDEIIDHLIFKHQLPYAKDVEMLLSSYRLLDLQCLLCDKTFNYLRKLISHMNVAHPNNSFECAECKKTFNKKRDLDSHIRLHHKKCYSCTKCDGTFPTNSALQIHRSNSHSSTCNICFQVFASDGKRLAHQKSDHDYNQSQCGFCNKVLTTKQAFIRHAANCERKPQEETVIIDDDEDKKVSVKEIRKSLACIFNMTTALPFKFFMNRLRCFYCTKDFTSCEDLKEHTSTEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCQVTLEDLNDLIDHLSKEHKVKCDFSVESNLQPFKLIKDNYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRRHKIADNHKCGNCDLVFGTNSALRNHQGTVHGTKLVQCFECSEKFTSQYSMQRHLITSHGTGHKCTYCDKLFTKNSFMVNHVRRSHLKEKNVECSVCFEKFFDGQRLKMHMVKHVGERNFHCDICGKKFLWKRNLRGHMASHIRNANSRHVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00712188;
- 90% Identity
- iTF_01093358; iTF_00746031; iTF_00124498; iTF_01094269; iTF_00831463;
- 80% Identity
- -