Basic Information

Insect: Globia sparganii
Gene Symbol: -
Assembly: GCA_949316385.1
Location: OX438682.1:6399796-6401592[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.058 5.8 8.6 0.7 1 23 32 54 32 54 0.95

2 16 0.25 25 6.6 0.1 2 23 82 104 81 104 0.88

3 16 6.7e-05 0.0068 17.9 0.4 2 23 125 147 124 147 0.96

4 16 3.9e-05 0.0039 18.6 2.8 1 23 152 174 152 175 0.96

5 16 7.7e-06 0.00078 20.8 0.6 1 23 179 202 179 202 0.95

6 16 0.076 7.7 8.2 0.3 2 23 205 227 204 227 0.95

7 16 0.03 3 9.5 1.3 2 20 233 251 232 256 0.91

8 16 0.00068 0.069 14.7 3.6 1 23 301 324 301 324 0.96

9 16 0.58 59 5.5 0.1 2 23 353 375 352 375 0.94

10 16 0.002 0.2 13.2 0.0 1 23 397 420 397 420 0.92

11 16 4.7e-05 0.0048 18.3 2.3 1 23 425 448 425 448 0.95

12 16 3.9e-05 0.004 18.6 0.5 1 23 454 477 454 477 0.96

13 16 8.7e-05 0.0088 17.5 1.0 2 23 483 505 482 505 0.97

14 16 0.0013 0.13 13.8 4.4 1 23 509 532 509 532 0.97

15 16 0.19 19 7.0 0.5 2 23 539 560 538 560 0.96

16 16 0.011 1.1 10.9 1.5 1 23 566 588 566 588 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.058	5.8	8.6	0.7	1	23	32	54	32	54	0.95
2	16	0.25	25	6.6	0.1	2	23	82	104	81	104	0.88
3	16	6.7e-05	0.0068	17.9	0.4	2	23	125	147	124	147	0.96
4	16	3.9e-05	0.0039	18.6	2.8	1	23	152	174	152	175	0.96
5	16	7.7e-06	0.00078	20.8	0.6	1	23	179	202	179	202	0.95
6	16	0.076	7.7	8.2	0.3	2	23	205	227	204	227	0.95
7	16	0.03	3	9.5	1.3	2	20	233	251	232	256	0.91
8	16	0.00068	0.069	14.7	3.6	1	23	301	324	301	324	0.96
9	16	0.58	59	5.5	0.1	2	23	353	375	352	375	0.94
10	16	0.002	0.2	13.2	0.0	1	23	397	420	397	420	0.92
11	16	4.7e-05	0.0048	18.3	2.3	1	23	425	448	425	448	0.95
12	16	3.9e-05	0.004	18.6	0.5	1	23	454	477	454	477	0.96
13	16	8.7e-05	0.0088	17.5	1.0	2	23	483	505	482	505	0.97
14	16	0.0013	0.13	13.8	4.4	1	23	509	532	509	532	0.97
15	16	0.19	19	7.0	0.5	2	23	539	560	538	560	0.96
16	16	0.011	1.1	10.9	1.5	1	23	566	588	566	588	0.96

Sequence Information

Coding Sequence: ATGACAAAGCATAGTGCTAGTTATCTAAGGAGGAGAAATCTGCAAATATTGCTCAACAATACAACGTTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGCGGGGACGATACGACGACGCCCGATCGTCTCCGGAAACACACGAAAGGCCACGGACCTTGCAGTGATAGCGACAGAGCTATACGACTAGTTAAATCAGCTGATATAGAAATCAAAATAGATGTATCCGATGTTTCGTGCGAGATTTGTTCAGAAACGTTCCCCTTTTTAGACAAAATTATTGACCATTTGATATTTAAACACCAACTGCCTTATGCGAAGGACGTAGAAATGCTGTTATCAGCGTACAGACTGTTAGATCTTCAGTGTCTCCTTTGCGATAAAACATTCAATTACTTACGTAAATTAATCAGCCATATGAATGTCGCTCATCCAATCAACAGTTTTGAGTGTGCCGAATGTaaaaagaaatttaataaaaagagGGATTTGGATTCGCACATAAGAATCCATCATAAGAAATGCTATTCTTGTACGAAATGTGATGAAACGTTCCCAACAAACTCCGCGTTACAAATTCACAGGTCTAACTCTCATTCATCGACTTGTAACATCTGCTTCCAAGTATTTGCGTCAGACGGCAAGCGGTTAGCTCATCAGAAATCTGACCATGATTCTAATCAGAGCCAATGTGGATTCTGCAATAAAGTTCTAACAACAAAACAGGCTTTTATAAGACATGCTGCAAATTGCGAACATAAACCTCAGGAAGAAACTGTCATAATAGATGACGATGAAGACAAAAAAGTATCCGtcaaagaaataagaaaaagtTTAGCATGCATCTTTAACATGACAACCGCACTTCCTTTCAAATTCTTTATGAATAGGTTTCGATGTTTCTATTGCACGAAAGACTTCACCTCATGCGAAGATTTAAAAGAACATACTTCGATAGAACATCCTCACTGCGATATATCCTTTAAGTCTATGAGATTAAGGAACAGATATGACGGTGTCCAAATTAAAGTTGATACTTCTTCTTTGTCTTGTAGACTATGCCAAGTCACCTTGGAAGATTTGAACGATTTGATTGATCATTTAAGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTCGAAAGTAATCTGCAGCCGTTTAAACTGATTAAAGACAACTACCCTTGCCCTATTTGCGGGGAAGTCTACAGATATTTTGGCGTCCTGCTCAAGCACGTTAGTGCATCACATAGTGGCAATAAACATATTTGCATGTACTGCGGCAAAGCGTTCAGAACTGACCCTAATCTTAGAGCTCATATTTCAAGGTGTCATAAAATCGCTGATAATCATAAGTGCGGAAACTGCGATCTAGTTTTTGGAACTAATAGTGCTTTAAGAAACCATCAAGGCACCGTTCACGGTACAAAATTAGTTCAATGCTTTGAATGTTCAGAAAAATTCACCTCGCAATATTCAATGCAACGACACTTAATCACCTCCCATGGTACGGGACATAGATGCACTTATTGTGATAAGTTATTCACTAAAAACTCTTTCATGGTCAACCACGTAAGGAGGTCTCATTTGAAAGAGAAAAATGTAGAATGTTCTGTGTGCTTCGAGAAATTTTTCGACGGTCAAAGGCTGAAAATGCATATGGTTAAACACGTTGGAGAAAGAAACTTTCATTGTGATATTTGTGGTAAAAAGTTCTTGTGGAAAAGGAATCTAAGGGGACATATGGCCTCCCATATCCGGAATGCGAACTCTAGAAACGTtacctaa
Protein Sequence: MTKHSASYLRRRNLQILLNNTTLIPFKWRGKYLCFYCGDDTTTPDRLRKHTKGHGPCSDSDRAIRLVKSADIEIKIDVSDVSCEICSETFPFLDKIIDHLIFKHQLPYAKDVEMLLSAYRLLDLQCLLCDKTFNYLRKLISHMNVAHPINSFECAECKKKFNKKRDLDSHIRIHHKKCYSCTKCDETFPTNSALQIHRSNSHSSTCNICFQVFASDGKRLAHQKSDHDSNQSQCGFCNKVLTTKQAFIRHAANCEHKPQEETVIIDDDEDKKVSVKEIRKSLACIFNMTTALPFKFFMNRFRCFYCTKDFTSCEDLKEHTSIEHPHCDISFKSMRLRNRYDGVQIKVDTSSLSCRLCQVTLEDLNDLIDHLSKEHKVKCDFSVESNLQPFKLIKDNYPCPICGEVYRYFGVLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHISRCHKIADNHKCGNCDLVFGTNSALRNHQGTVHGTKLVQCFECSEKFTSQYSMQRHLITSHGTGHRCTYCDKLFTKNSFMVNHVRRSHLKEKNVECSVCFEKFFDGQRLKMHMVKHVGERNFHCDICGKKFLWKRNLRGHMASHIRNANSRNVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00712188;
90% Identity: iTF_00758476;
80% Identity: -