Basic Information

Insect: Gonocerus acuteangulatus
Gene Symbol: -
Assembly: GCA_946811585.1
Location: CAMPFD010006879.1:33549-35177[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.13 8.7e+02 2.0 0.1 26 48 27 49 16 54 0.86

2 18 0.15 9.9e+02 1.8 0.1 17 48 47 78 42 84 0.82

3 18 0.064 4.3e+02 3.0 0.2 21 48 80 107 72 109 0.84

4 18 0.00042 2.8 10.0 0.5 19 52 107 140 104 141 0.82

5 18 0.011 74 5.4 0.0 22 48 138 164 134 167 0.89

6 18 0.013 85 5.2 0.1 18 48 163 193 161 196 0.87

7 18 0.044 3e+02 3.5 0.7 25 44 199 218 191 226 0.79

8 18 0.0077 52 5.9 0.3 22 48 224 250 220 255 0.89

9 18 0.028 1.9e+02 4.1 0.3 24 48 255 279 248 283 0.82

10 18 0.00021 1.4 10.9 0.6 23 49 283 309 280 313 0.90

11 18 0.005 33 6.5 0.1 23 49 312 338 309 343 0.89

12 18 0.0018 12 7.9 0.2 17 48 335 366 327 371 0.87

13 18 0.0042 28 6.8 0.5 18 45 365 392 362 401 0.82

14 18 1.2 7.8e+03 -1.1 0.0 21 44 396 419 392 428 0.72

15 18 0.025 1.7e+02 4.3 0.1 23 48 427 452 420 457 0.84

16 18 0.097 6.5e+02 2.4 0.1 18 48 451 481 449 487 0.85

17 18 0.31 2.1e+03 0.8 0.1 21 48 483 510 478 512 0.85

18 18 0.0058 39 6.3 0.1 21 50 512 541 507 542 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.13	8.7e+02	2.0	0.1	26	48	27	49	16	54	0.86
2	18	0.15	9.9e+02	1.8	0.1	17	48	47	78	42	84	0.82
3	18	0.064	4.3e+02	3.0	0.2	21	48	80	107	72	109	0.84
4	18	0.00042	2.8	10.0	0.5	19	52	107	140	104	141	0.82
5	18	0.011	74	5.4	0.0	22	48	138	164	134	167	0.89
6	18	0.013	85	5.2	0.1	18	48	163	193	161	196	0.87
7	18	0.044	3e+02	3.5	0.7	25	44	199	218	191	226	0.79
8	18	0.0077	52	5.9	0.3	22	48	224	250	220	255	0.89
9	18	0.028	1.9e+02	4.1	0.3	24	48	255	279	248	283	0.82
10	18	0.00021	1.4	10.9	0.6	23	49	283	309	280	313	0.90
11	18	0.005	33	6.5	0.1	23	49	312	338	309	343	0.89
12	18	0.0018	12	7.9	0.2	17	48	335	366	327	371	0.87
13	18	0.0042	28	6.8	0.5	18	45	365	392	362	401	0.82
14	18	1.2	7.8e+03	-1.1	0.0	21	44	396	419	392	428	0.72
15	18	0.025	1.7e+02	4.3	0.1	23	48	427	452	420	457	0.84
16	18	0.097	6.5e+02	2.4	0.1	18	48	451	481	449	487	0.85
17	18	0.31	2.1e+03	0.8	0.1	21	48	483	510	478	512	0.85
18	18	0.0058	39	6.3	0.1	21	50	512	541	507	542	0.86

Sequence Information

Coding Sequence: ATGTATGATTCTTCAGTCTATGACTCAACTACTGAACAAACTTTAAAGAATCATATCATGAGTGAACCTTCTAATCATGCATGTCCTTATTGTGACTACTCTTCAACCAATTTCCGATATTTAAAAAAGCACATCAACTCAAAACATAATAAAGACAAATCTCATTCCTGCCCTTACTGTGACTTCACTACAGTTCATTCTGGAAGTTTAAAGAACCACATCGGCTCTAAACATAGTAATGTGAAACCTCGCTCCTGCCCACATTGTGACTTCACTACAGCTCATTCTCAAAGTTTAAAGGATCACATTATCTCAAAACACAGTAAAGACAAACCACACTCCTGCCCACATTGTAAATACTCTACAGCTTtgtctcaaaatttaaaaagacaCATCTTCACACATAGTATTGACAAACCTCACTCCTGCCCTCATTGTGACTTTTCTACAGCTAATTctggaaatttaaaaaatcacattatcTCTAAACATAGTAATGAGAAATCTCACGCCTGTCCCCAATGTGACTTCACTACAGCTCATTCCGGAAATTTAAAGAACCACATTATATCTAAACATACTGAAGACAGACGTCACTCTTGCCCACATTGTGAATATACTACAGCTTTGCTTCGAGATTTAAGGAGACACATCTTGACTCATAGTAATGATAAACCTCACCCCTGTCCTCATTGTGACTATTCTACAGcttattctcataatttgaaacTACACCTTACCTCTCAACACAGTAATTCCAAATCTCACTCCTGCCATCTTTGTGACTTTACTACAGCTTACGCCCAAAATTTAAAGAGACACATTATCTTTAAACATACTAAATACAAACCTTTATCCTGCCCGAATTGCAATTACACTACAGCTAATTCTCGATATTTAAAGAGACACATACACGCTAAACATATTAATTACAAACCTCTCACCTGCCCTTATTGTGACTTCACTACAGTATATTCTGGAAGTTTAAAGACTCACATCAGCTCTAGACACAGTAATATTAAACCTCACTCCTGCCCACACTGTGACTTCACTACAGCTCATTCTCGAAGTTTAAAGGATCACATTATCTCAAAACATAGTACAGACAAACCTTACTCTTGTCCACATTGTATATACACTGCAGCTTTGCCTCGTGATTTAAAAAGACACATCTTGACACATAGTAATGAAAAACCTCACACTTGCTTGCATTGTGATTTTACTACAGCAgaattttataaattgaaaGTACACATCATCGCTAAACATAGTACAGACAAAACTCACTCCTGCCCTCATTGTGATTTTAGTACAGCTTATTCtcataatttaaaacaacacattGTCTCTAAACATAGTAACGATAAACCTTACTCTTGCGAGCATTGTGATTTCACTACAGTGTACTCATATAATTTAAAGAATCATATCATTTGTAAGCATAGTAATGATAAACCTCACCCCTGTCTTTATTGTGACTATACTACAGCTAGTTCTAAGGACTTAAAGAAACATATTATCCGTAAACATAGTAATGAAAAACCTCATTCCTGCCCATATTGTGACTTTGCTACAGCATATTCTGGAAGTTTAAAGAACCACATTATCTATAAACATAGTAATAAATGA
Protein Sequence: MYDSSVYDSTTEQTLKNHIMSEPSNHACPYCDYSSTNFRYLKKHINSKHNKDKSHSCPYCDFTTVHSGSLKNHIGSKHSNVKPRSCPHCDFTTAHSQSLKDHIISKHSKDKPHSCPHCKYSTALSQNLKRHIFTHSIDKPHSCPHCDFSTANSGNLKNHIISKHSNEKSHACPQCDFTTAHSGNLKNHIISKHTEDRRHSCPHCEYTTALLRDLRRHILTHSNDKPHPCPHCDYSTAYSHNLKLHLTSQHSNSKSHSCHLCDFTTAYAQNLKRHIIFKHTKYKPLSCPNCNYTTANSRYLKRHIHAKHINYKPLTCPYCDFTTVYSGSLKTHISSRHSNIKPHSCPHCDFTTAHSRSLKDHIISKHSTDKPYSCPHCIYTAALPRDLKRHILTHSNEKPHTCLHCDFTTAEFYKLKVHIIAKHSTDKTHSCPHCDFSTAYSHNLKQHIVSKHSNDKPYSCEHCDFTTVYSYNLKNHIICKHSNDKPHPCLYCDYTTASSKDLKKHIIRKHSNEKPHSCPYCDFATAYSGSLKNHIIYKHSNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00757504;
90% Identity: iTF_00757504;
80% Identity: iTF_00757504;