Gqui020359.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- ZIPIC
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010001466.1:5846-33591[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.017 1.1e+02 4.1 0.0 21 44 188 210 182 213 0.79 2 9 1.9e-05 0.12 13.6 0.0 20 48 213 239 211 242 0.86 3 9 2.1 1.4e+04 -2.6 0.0 26 43 248 266 245 270 0.62 4 9 0.49 3.1e+03 -0.6 0.2 25 44 274 290 264 295 0.76 5 9 0.05 3.2e+02 2.6 0.3 21 31 295 305 292 321 0.83 6 9 0.0024 15 6.8 0.1 21 48 323 350 315 353 0.91 7 9 0.0018 12 7.2 0.0 19 44 557 581 550 584 0.81 8 9 6.1e-06 0.039 15.1 0.0 20 45 584 609 582 615 0.92 9 9 0.89 5.7e+03 -1.4 0.2 26 44 617 635 611 639 0.78
Sequence Information
- Coding Sequence
- ATGGAAGATATATGTAGAACATGTCTGAGTTCTTCTGTGAAACTAATTTCTCTCGAATGCGATAAGAACCTCTTggacaaaattgaaattttaacttCAGTGAAGATTTCTCTGGATACAAACATGTATCCATCAACGATCTGTGAAGGGTGTATAAACAATCTCAACAATTTCCATAATTTTCGTGAAAAGGTTATCAATGCAGACAAGATCCTGAGGGAGCACTATAGTAATACTCTTTCTATGTCGAAGAAAAAAGCAGTTGACTTAGATAAAAGTGGATCTAAGGGTGGAAAATTAGACGAGTCAATAATAATAGAGGAAAGTACAAATGTAAAGCAGGCATTTGAAtgtgaaataataattattaagcAAGAGCCAATAGATAATGACAATCCTCTCTGTGCTGCTGCTGAAAACACTTCAACTTGTGGGGACGATCAAACAGATATCGAACAAAAAAATGAAGGAGTTAGTGATAACTATAGTGAGGAAATCAGTGATAACCGAAGTGATAAGACTGAGAAGAAAtgtaatttattgaataataacgGTAGCAATCCCTCGACACCTGGTGTCTGCAGCATTTGTGGGAAAGTTGTTAGGGCGGATCACTTGAAGAAGCATATGATGGTTCATTCCGAAGGGCCTGTTACATGCAAGATATGTAATAAAGTTTTGAGGAACTCGACATTACGAGGGCACATGATGCGACATAAAGGATATAAATTCACTTGTGAGACATGTGGGAAATGTTTCAGTATGAAGTATGACTACCACAGGCATATGAGAAAGCATGCAGATCCCAACGCAGATAAGGTAACGTGTAAGTTGTGCGGCATTCGGGTGCGTGGGTTGAAACGTCATCTTCTGAGCCATACAGGAGAACGTCCCTTTGTCTGCCCAATTTGCAGCAAAGGTCTCACCTCCAAACATGCTCTCGATGTCCACGGTCGACAGCATACAGACGAGAAACCCTTCAGATGTGAATATTGCAGCAAGGCATTCAAACAAAAAGTTTCCCTCAGGATGCATCTGAAATCCAAACATAGCATAGGAAATAAAATGGAAGATGTGTGTAGAACATGCCTAAGTTCTTCTGCAAAGCTATTTCCCATGGAAAGTGATGCAGGCCttttagaaaaaatcgaaattttaacTTCGGTGCAGATTTCCTCGGATACTGATGAGTATCCATCTACAATTTGTGAAGGATGTATCGAGAACCTAAACAAGTTCTACTGTTTCCGTGAGATTGTAATCAACGCTGACAAGACTTTGAAAgaaaaatacagtatttccttTCCCACTGTGAAAAAGAGGAAAGCAACGTCTAGAAAACGAAACTATGATGAAAGCAGGAAACATAGGAAATTGAACATCAAAGCGCTTATAAGAGAAAAAAGCGCAAATGTCCAGCAGAAAGAATGTGAGACAGCGATAAGCATAAAGCAAGAACCTATAGGTTTCGATGATCCTCTGTCTTGTGGAGAAGATGCTACAGCTTGCGAGGATGATAATGCAGATATCAAACTAGAAATTGAGAACAtaatcatcaacaacaaaatcgaGGCAAGTGAGCTAACCGAGGAGAACTGCAAGCTAAGGCAATGTGAAGAGTGTAACTTAACTTTCACGTCGTATTCGACCTTGTCCAATCACAAGAGAAACATGCATTCAGCACCCGGCATCTGCACCATCTGTGGCGTAGTCGTTAGGGCGGATAACTTGAAAAAACACATGCTGGTGCATTCCGAGGAGCCAGTTACGTGCAAGATATGTAACAGAGTATTGAAAAACACAGGTTCTCTAAGAGGGCATTTGCTTATACATAAGGGAGAGACTTATACTTGTGATATGTGTGGAAGGTGTTTTCGGGTTAAGTCTGAGTATCACAGGCATATGAGGAAGCATGACGATCCCAACCTACTAAAGTAA
- Protein Sequence
- MEDICRTCLSSSVKLISLECDKNLLDKIEILTSVKISLDTNMYPSTICEGCINNLNNFHNFREKVINADKILREHYSNTLSMSKKKAVDLDKSGSKGGKLDESIIIEESTNVKQAFECEIIIIKQEPIDNDNPLCAAAENTSTCGDDQTDIEQKNEGVSDNYSEEISDNRSDKTEKKCNLLNNNGSNPSTPGVCSICGKVVRADHLKKHMMVHSEGPVTCKICNKVLRNSTLRGHMMRHKGYKFTCETCGKCFSMKYDYHRHMRKHADPNADKVTCKLCGIRVRGLKRHLLSHTGERPFVCPICSKGLTSKHALDVHGRQHTDEKPFRCEYCSKAFKQKVSLRMHLKSKHSIGNKMEDVCRTCLSSSAKLFPMESDAGLLEKIEILTSVQISSDTDEYPSTICEGCIENLNKFYCFREIVINADKTLKEKYSISFPTVKKRKATSRKRNYDESRKHRKLNIKALIREKSANVQQKECETAISIKQEPIGFDDPLSCGEDATACEDDNADIKLEIENIIINNKIEASELTEENCKLRQCEECNLTFTSYSTLSNHKRNMHSAPGICTICGVVVRADNLKKHMLVHSEEPVTCKICNRVLKNTGSLRGHLLIHKGETYTCDMCGRCFRVKSEYHRHMRKHDDPNLLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00756028;
- 90% Identity
- iTF_00756028;
- 80% Identity
- iTF_00756028;