Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: ZIPIC
Assembly: GCA_018342105.1
Location: JAFIRS010001466.1:5846-33591[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.3e-05 0.0027 19.1 0.5 2 23 193 213 193 213 0.97

2 10 0.00049 0.057 14.9 0.8 2 23 219 239 218 239 0.97

3 10 1e-05 0.0012 20.2 8.2 1 23 244 266 244 266 0.99

4 10 5.5 6.3e+02 2.2 1.9 3 23 276 293 274 293 0.70

5 10 0.00081 0.093 14.3 0.3 1 23 299 321 299 321 0.97

6 10 4.8e-06 0.00055 21.3 2.7 1 23 327 350 327 350 0.97

7 10 0.00011 0.013 17.0 1.6 2 23 537 559 537 559 0.96

8 10 0.00045 0.052 15.1 0.0 3 23 565 584 564 584 0.97

9 10 0.0012 0.14 13.7 0.2 2 23 590 611 589 611 0.97

10 10 3.2e-06 0.00037 21.8 6.9 1 23 616 638 616 638 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.3e-05	0.0027	19.1	0.5	2	23	193	213	193	213	0.97
2	10	0.00049	0.057	14.9	0.8	2	23	219	239	218	239	0.97
3	10	1e-05	0.0012	20.2	8.2	1	23	244	266	244	266	0.99
4	10	5.5	6.3e+02	2.2	1.9	3	23	276	293	274	293	0.70
5	10	0.00081	0.093	14.3	0.3	1	23	299	321	299	321	0.97
6	10	4.8e-06	0.00055	21.3	2.7	1	23	327	350	327	350	0.97
7	10	0.00011	0.013	17.0	1.6	2	23	537	559	537	559	0.96
8	10	0.00045	0.052	15.1	0.0	3	23	565	584	564	584	0.97
9	10	0.0012	0.14	13.7	0.2	2	23	590	611	589	611	0.97
10	10	3.2e-06	0.00037	21.8	6.9	1	23	616	638	616	638	0.99

Sequence Information

Coding Sequence: ATGGAAGATATATGTAGAACATGTCTGAGTTCTTCTGTGAAACTAATTTCTCTCGAATGCGATAAGAACCTCTTggacaaaattgaaattttaacttCAGTGAAGATTTCTCTGGATACAAACATGTATCCATCAACGATCTGTGAAGGGTGTATAAACAATCTCAACAATTTCCATAATTTTCGTGAAAAGGTTATCAATGCAGACAAGATCCTGAGGGAGCACTATAGTAATACTCTTTCTATGTCGAAGAAAAAAGCAGTTGACTTAGATAAAAGTGGATCTAAGGGTGGAAAATTAGACGAGTCAATAATAATAGAGGAAAGTACAAATGTAAAGCAGGCATTTGAAtgtgaaataataattattaagcAAGAGCCAATAGATAATGACAATCCTCTCTGTGCTGCTGCTGAAAACACTTCAACTTGTGGGGACGATCAAACAGATATCGAACAAAAAAATGAAGGAGTTAGTGATAACTATAGTGAGGAAATCAGTGATAACCGAAGTGATAAGACTGAGAAGAAAtgtaatttattgaataataacgGTAGCAATCCCTCGACACCTGGTGTCTGCAGCATTTGTGGGAAAGTTGTTAGGGCGGATCACTTGAAGAAGCATATGATGGTTCATTCCGAAGGGCCTGTTACATGCAAGATATGTAATAAAGTTTTGAGGAACTCGACATTACGAGGGCACATGATGCGACATAAAGGATATAAATTCACTTGTGAGACATGTGGGAAATGTTTCAGTATGAAGTATGACTACCACAGGCATATGAGAAAGCATGCAGATCCCAACGCAGATAAGGTAACGTGTAAGTTGTGCGGCATTCGGGTGCGTGGGTTGAAACGTCATCTTCTGAGCCATACAGGAGAACGTCCCTTTGTCTGCCCAATTTGCAGCAAAGGTCTCACCTCCAAACATGCTCTCGATGTCCACGGTCGACAGCATACAGACGAGAAACCCTTCAGATGTGAATATTGCAGCAAGGCATTCAAACAAAAAGTTTCCCTCAGGATGCATCTGAAATCCAAACATAGCATAGGAAATAAAATGGAAGATGTGTGTAGAACATGCCTAAGTTCTTCTGCAAAGCTATTTCCCATGGAAAGTGATGCAGGCCttttagaaaaaatcgaaattttaacTTCGGTGCAGATTTCCTCGGATACTGATGAGTATCCATCTACAATTTGTGAAGGATGTATCGAGAACCTAAACAAGTTCTACTGTTTCCGTGAGATTGTAATCAACGCTGACAAGACTTTGAAAgaaaaatacagtatttccttTCCCACTGTGAAAAAGAGGAAAGCAACGTCTAGAAAACGAAACTATGATGAAAGCAGGAAACATAGGAAATTGAACATCAAAGCGCTTATAAGAGAAAAAAGCGCAAATGTCCAGCAGAAAGAATGTGAGACAGCGATAAGCATAAAGCAAGAACCTATAGGTTTCGATGATCCTCTGTCTTGTGGAGAAGATGCTACAGCTTGCGAGGATGATAATGCAGATATCAAACTAGAAATTGAGAACAtaatcatcaacaacaaaatcgaGGCAAGTGAGCTAACCGAGGAGAACTGCAAGCTAAGGCAATGTGAAGAGTGTAACTTAACTTTCACGTCGTATTCGACCTTGTCCAATCACAAGAGAAACATGCATTCAGCACCCGGCATCTGCACCATCTGTGGCGTAGTCGTTAGGGCGGATAACTTGAAAAAACACATGCTGGTGCATTCCGAGGAGCCAGTTACGTGCAAGATATGTAACAGAGTATTGAAAAACACAGGTTCTCTAAGAGGGCATTTGCTTATACATAAGGGAGAGACTTATACTTGTGATATGTGTGGAAGGTGTTTTCGGGTTAAGTCTGAGTATCACAGGCATATGAGGAAGCATGACGATCCCAACCTACTAAAGTAA
Protein Sequence: MEDICRTCLSSSVKLISLECDKNLLDKIEILTSVKISLDTNMYPSTICEGCINNLNNFHNFREKVINADKILREHYSNTLSMSKKKAVDLDKSGSKGGKLDESIIIEESTNVKQAFECEIIIIKQEPIDNDNPLCAAAENTSTCGDDQTDIEQKNEGVSDNYSEEISDNRSDKTEKKCNLLNNNGSNPSTPGVCSICGKVVRADHLKKHMMVHSEGPVTCKICNKVLRNSTLRGHMMRHKGYKFTCETCGKCFSMKYDYHRHMRKHADPNADKVTCKLCGIRVRGLKRHLLSHTGERPFVCPICSKGLTSKHALDVHGRQHTDEKPFRCEYCSKAFKQKVSLRMHLKSKHSIGNKMEDVCRTCLSSSAKLFPMESDAGLLEKIEILTSVQISSDTDEYPSTICEGCIENLNKFYCFREIVINADKTLKEKYSISFPTVKKRKATSRKRNYDESRKHRKLNIKALIREKSANVQQKECETAISIKQEPIGFDDPLSCGEDATACEDDNADIKLEIENIIINNKIEASELTEENCKLRQCEECNLTFTSYSTLSNHKRNMHSAPGICTICGVVVRADNLKKHMLVHSEEPVTCKICNRVLKNTGSLRGHLLIHKGETYTCDMCGRCFRVKSEYHRHMRKHDDPNLLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00756294;
90% Identity: iTF_00756294;
80% Identity: iTF_00756294;