Gcor016705.2
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029298725.1
- Location
- CM055517.1:6756967-6760942[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-114 1.6e-110 369.5 35.6 1 300 125 422 125 422 0.97 2 2 0.021 1.6e+02 1.8 3.5 120 171 420 471 419 481 0.88
Sequence Information
- Coding Sequence
- aTGGTGGTTGCACCGGAAGTGGTAGTGCAGTCGAAATGGGGCCATCAGATACAAAGAAGTCCTTCGTTGAGCGACTGTCTTTCGGAAAGCGATGATACTCCTCCGGCTCACGTTCTGTTCGTGACCACAGTCTCGATGTGCAAGAAAAATGTCGATAAAATATCGTACCGCGATAAGAAAACGTCCGTTTATGGGGTATGGTCACACGTCGCGTTAAAAACgtgtaattttttcaaaatgacGGACACAATTGAAGGTGTTAGCATCGATGGCGTAACGAAATCGGAGAGTTCCACTGATTGTGATGGACAAAGAATACAAACGACTTCTGACGATGTGATTCAACAGTTAATGCAAAGCAGTAGTGATAAAgcagaAGCACGTTTGTGGGCCAAAAGACAGGCTCGAGCCGAAGCGAGGGAAATCCGTATGCGCGAACTGGAGAGGCAGCAGaaagaacaagaagaaaatgCAGACCGACAATTTGATATGTTATCTGAGCCGATGGCGCGAACGACGAGGACGTCGACGAGTGGTAGTAGGTACCTATCTAGCAGAAGGAGTTCTGAAGACTCGCTGGAAGATGGTGGCAGTCTCAGGGATATGCGGAATGAACTGAAGGAATACGAGGAGAAATTCCGAAAGGCGATGATCGCCAACGCCCAACTCGATAACGACAAAACATCTCTTACATATCAACTGGAGTTACTTAAAAATAGGATAGAAGAATTGGAAGAAGAGCATTCCCAGTTAAAGCGAGAACACCGAGAGGAGTGCCGAGCACACGAACAATTAAAACGGTTGTGTGCCAAACTGAAAGATGACTTGGCTGTGACTAGGGCAGAACTAGAAGAAAGAGACCAGTTAATAAGTGAGAAGGGTTTAGTCATCGTCGGAGAAGACTCTTTCAACGAAGAAGAACAAATCAACGGTGCCGTTAGTCTCAATAATAGTATAGGAACACCGAAAAAAGCGTTAGTTAGTATAGAAAATGCTCAGTTACTAGAAAGTGCAGGTGAGGGAAGTTTAGACGTGCGATTGGCGAAGTTTATGAAAGAAAAAAGCGAGTTGCAAGATCAGATTAGCCATTTAAAATTAGAGTTAGAAGAGGAgagaagcaaaagaaaaaaatcgaaTTCTGTGAATACGCTGAACGGACCATTATCGGAACACGACGTCGATGAAATAGACCTACAAAGGGAAGCGAGCAAACAGCTCGGGGACTATAAATTCAGAGCTCAAAAAGCCGAACAAGACGTCGCTACTTTACAAGCGACGGTGGCGAGGCTAGAAAGTCAAGTTATTAGGTATAAGGCAGCCGCCGAAATTTCAGAAAAAGCGGAAGAAGCGCTAAAAgccgaaaaacgaaaaatgcaAAGAGAGACGAGGGAAGCAATGAGCCGAGTAGAAGAACTAGAAACAGCAAATACACATTTATTAAAACGATTAGATAAGTTGAAGAATGCGAAATCGGCGTTACTAAAAGAACTTTGA
- Protein Sequence
- MVVAPEVVVQSKWGHQIQRSPSLSDCLSESDDTPPAHVLFVTTVSMCKKNVDKISYRDKKTSVYGVWSHVALKTCNFFKMTDTIEGVSIDGVTKSESSTDCDGQRIQTTSDDVIQQLMQSSSDKAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLSEPMARTTRTSTSGSRYLSSRRSSEDSLEDGGSLRDMRNELKEYEEKFRKAMIANAQLDNDKTSLTYQLELLKNRIEELEEEHSQLKREHREECRAHEQLKRLCAKLKDDLAVTRAELEERDQLISEKGLVIVGEDSFNEEEQINGAVSLNNSIGTPKKALVSIENAQLLESAGEGSLDVRLAKFMKEKSELQDQISHLKLELEEERSKRKKSNSVNTLNGPLSEHDVDEIDLQREASKQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKAAAEISEKAEEALKAEKRKMQRETREAMSRVEELETANTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415112;
- 90% Identity
- -
- 80% Identity
- -