Gcor019549.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- bab2
- Assembly
- GCA_029298725.1
- Location
- JARHXT010000016.1:1492193-1495902[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-14 5.6e-11 42.3 0.0 2 45 361 404 360 404 0.93
Sequence Information
- Coding Sequence
- ATGTGTGCAGCTCAGCAATACTGCCTCCGGTGGAACAACCACCGCTCGAATTTACTAACAGTTTTTGACGAACTCCTCCAAAACGAAGCCTTCACCGATGTAACCCTCGCTTGCGAAGGCGGCAATCCTATAAAATGCCACCGAATGGTCTTGGCCGCCTGCTCCCCGTATTTCCAAAACCTCTTCACGGACCTCCCATGCAAGCACCCCGTGGTGGTCCTCAAAGACGTCAAATACACCGAAATCAAAGCCATATTAGAATACATGTATCGTGGTGAAGTAAACGTTGCTCAAGACCAACTCGCAGCTCTGCTCAAAGTGGCCGAAGCGCTCAAAGTTAAAGGTTTAGTCGAAGAAAACAGATCCAGCGGTGCTAGTTTCTCCTGCAGAGATGAGGAGCCGATGGAGCACTCTCCCACGGGAACTAGCAACTCGAATTCAAGCATCCAGAACGTCCACAGCAGCAGCAACCACTCGCCGCCGCATTCGACGAATAGCCATTACAAGAATCCTTACAGTGGGATGTATTCAGGGAAGTCCGGGAGCATGGATAGGAACTCTCGAATGAATTTACCGATGTGGGCGATTCCGGGACTACCAATCCCGCCACATTCTAACCCTGTTCCTAATCAAAACCATCCTCATGCCGCTACGGCCGCCGCCGCCATGTTGAGCAGTTGTTACGAAGCCGCGACGGACATGTCGCCGCTGAGGAGGAAGAAATTGTCAAGTCTTCTCATGAATAGAGACACTCCTATTTTGAGGACTGTTCTAGGACAAGGTCAAGCCGATTCATCGCAACCTGTGAGTTTAGTGTGTCATCCGGATAGCCATGATCAACAGTCAAACGGACCCGACCAAGAACGCATGGACAAGCACTTGAAGAGCGAGCCGTCCGAGGACGCCCAGTCGCCCTACACCGACTTCACCATGATGAACGACGACgaagaaaaatcaaaactcgCAATTCCGTCCTCTTCTCCCCAGTCGCACTCGAACGAAATGCGCGCCGTGTCCTCCGGAATCGCCACGTACGTCCCGACCCAGAGGCCCGAATGGAAGCGCTACAAGCAATACACCCGCCAAGACATCCTCTCCGCCATCGACTCGGTCCGAAACGGCATGTCCGCCCTCCAAGCCGCGAAGAAGTACGGCGTTCCTTCCAGGACTCTCTACGACAAAGTGAAGAAGTTGGGGATCACGACCAGTCGCCCCTTCAAGCGCGGCTCCAACGGGAGTCCCGCGTGTTTCCCCTATGGTTTGAGTGGCACTGGGTCGCCGTACATGTCGGAGAACGACGACACTCCCACCAACAACAACACGTCGCTGCTGGAAGCGACGTTCCTGCAGCACGCGTTTGATAGTCGTGGGGGCGACGATCGGGAGGCTTTGGCGGCGAtggcggtggcggcggcggcgcaCGCTATGACGAGTCCTCCGAACCACGGCCAAGCCACCAGTCCCAGTCCGAGTCCGACTTTGATGAAGTACATGAGGCAGAGCAGTTTGACTCCTTCGCCGGCGCCCCACAGCGAGACGAACGGGAGTTCGGAGAGGGAACACGATGATGACGACCAAGTGGAGGATTTGTCCGTGGGGAGGAAGCAGGAATCGCGGGTGATTATGCCCCCCATGAACCAGGTCTCCACGATAATGAAGAAGGAGGAGCTGCTGAAAGACATCATCAAGGAGGAGGCGCGTCGGGAGATCAGCGTGGAGGAGGCGGAGTAG
- Protein Sequence
- MCAAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEGGNPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYTEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSSGASFSCRDEEPMEHSPTGTSNSNSSIQNVHSSSNHSPPHSTNSHYKNPYSGMYSGKSGSMDRNSRMNLPMWAIPGLPIPPHSNPVPNQNHPHAATAAAAMLSSCYEAATDMSPLRRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSHDQQSNGPDQERMDKHLKSEPSEDAQSPYTDFTMMNDDEEKSKLAIPSSSPQSHSNEMRAVSSGIATYVPTQRPEWKRYKQYTRQDILSAIDSVRNGMSALQAAKKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSPACFPYGLSGTGSPYMSENDDTPTNNNTSLLEATFLQHAFDSRGGDDREALAAMAVAAAAHAMTSPPNHGQATSPSPSPTLMKYMRQSSLTPSPAPHSETNGSSEREHDDDDQVEDLSVGRKQESRVIMPPMNQVSTIMKKEELLKDIIKEEARREISVEEAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01277622;
- 90% Identity
- iTF_01409879;
- 80% Identity
- iTF_00752874; iTF_00753082; iTF_00753083;