Basic Information

Insect: Glossina palpalis
Gene Symbol: -
Assembly: GCA_000818775.1
Location: Scaffold195:91402-100168[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.028 2.2 9.0 0.3 1 23 316 341 316 341 0.91

2 17 4.3 3.4e+02 2.1 4.7 2 19 353 370 353 372 0.94

3 17 0.51 41 5.1 0.2 3 23 415 436 414 436 0.91

4 17 0.00049 0.039 14.6 4.5 3 23 444 464 443 464 0.97

5 17 0.00075 0.059 14.0 5.5 1 23 470 493 470 493 0.97

6 17 0.0003 0.024 15.2 5.0 2 23 501 522 500 522 0.96

7 17 2 1.6e+02 3.2 0.0 1 20 531 550 531 552 0.91

8 17 0.013 1.1 10.1 0.7 1 21 572 592 572 597 0.93

9 17 0.63 50 4.8 3.3 1 23 602 624 602 624 0.97

10 17 0.029 2.3 9.0 0.5 1 23 640 665 640 665 0.97

11 17 0.032 2.5 8.9 2.1 1 23 678 701 678 701 0.96

12 17 0.0045 0.35 11.5 4.2 2 23 707 729 706 729 0.93

13 17 0.045 3.5 8.4 2.4 2 23 733 755 732 755 0.94

14 17 0.00033 0.026 15.1 2.3 1 23 761 784 761 784 0.97

15 17 0.01 0.81 10.4 0.6 1 23 789 811 789 811 0.98

16 17 4.5e-05 0.0036 17.8 5.7 1 23 817 840 817 840 0.98

17 17 0.29 23 5.8 2.3 1 19 845 863 845 868 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.028	2.2	9.0	0.3	1	23	316	341	316	341	0.91
2	17	4.3	3.4e+02	2.1	4.7	2	19	353	370	353	372	0.94
3	17	0.51	41	5.1	0.2	3	23	415	436	414	436	0.91
4	17	0.00049	0.039	14.6	4.5	3	23	444	464	443	464	0.97
5	17	0.00075	0.059	14.0	5.5	1	23	470	493	470	493	0.97
6	17	0.0003	0.024	15.2	5.0	2	23	501	522	500	522	0.96
7	17	2	1.6e+02	3.2	0.0	1	20	531	550	531	552	0.91
8	17	0.013	1.1	10.1	0.7	1	21	572	592	572	597	0.93
9	17	0.63	50	4.8	3.3	1	23	602	624	602	624	0.97
10	17	0.029	2.3	9.0	0.5	1	23	640	665	640	665	0.97
11	17	0.032	2.5	8.9	2.1	1	23	678	701	678	701	0.96
12	17	0.0045	0.35	11.5	4.2	2	23	707	729	706	729	0.93
13	17	0.045	3.5	8.4	2.4	2	23	733	755	732	755	0.94
14	17	0.00033	0.026	15.1	2.3	1	23	761	784	761	784	0.97
15	17	0.01	0.81	10.4	0.6	1	23	789	811	789	811	0.98
16	17	4.5e-05	0.0036	17.8	5.7	1	23	817	840	817	840	0.98
17	17	0.29	23	5.8	2.3	1	19	845	863	845	868	0.94

Sequence Information

Coding Sequence: ATGACCGTCAAATCAGACGTTTGTTTGCATTGCAATTTCGCTAATTGCGAATCGGCAGATGAAAGCAGGCAGTTTCAGGATTTATTCGATGAATTGGGAACGGAATTGCAACTAGTAAAATTAGTGGAAAAGTTTTTCCATTTAAAAGTGTTGGAAACTAACAACCAAAAATTATGTGAAGATTGTGTGAATCATTTAATTGAGTTAGTGGATTTGGAAGAGCATGGCAAAAGATCAGACGAGAGGCATTCGCAGACGGTTTCGGAAACTGAATGCGAATTTGAAAGTGTGAATGACGATGATCAGTTGTCTAATGAATTCTGCGAACAAATATTGTCGGATGGTAATGATGAAACCGAAAGTTCGCAATTTGAAAGCGTGCTCATAACAACTGAAGACATAAGCTTTGATAGCGTAACAAATGAAGCTAACTCGGTCAAGATGTTATCTCCGGAAAGTAATGTAGCGAGCAAAAACGAACTTGATTACCATGATGCATTATTTGAAGAGATAGCAGAAAATTCACACAGTAATCAAGCAAACACGGATGATGAATATGAAAAAGTGTTTAACGAAGTATACGTAGTACAAGAAGATACCCAAAGTTCCGATATTGATTTTGCAGGTAGTGACTGTGACGAAGTTGAAGCTGAAAATGGAAGTTGTTCCGCAGATTATGTGGAAGCTCAAGAATTGTTCAATGGTACTTTTTATTTTAATTATATTAAACGAATTATGGATTACATAAAATTTCCAGAAATTCCTAGTTCTTTGGTTGTCGATCGTGTTGACTTTAACGGTTACTTAGACTTAGCTCTAAGTACCGAATTCGAAAATTTGGAGCTACGTTGGACTACCGAGTGCAAGTTGTGTTTGGGCAAATACGAGACATTACAGGAACTCTTAACGCACACTTGCCTCACGAAACAAGCCTCTGAAGAAAATTTCGTGTGTCTGTTCAAAGGTTGCGATGAAGTTTTAACAAATATCAAGCATTTAGCTAGACATATTGTTATAAGGCATTATAGAAACTTAGAAAGCTTGAAAATCTATGGAAGCTGTCCGGAATGTGAATGTAACTTTTCAGAGTTTACACAATATAACAAGCATTCTTGTTGTCGTCATTTAAGACGAATACCCGGCGTAGGCAACACCTGCAAATTTTGTAATTTAAGTTTTCAATCATTCAAAAGATACATTTTTCATATGCAATTTCATTTGCAAAAACATCGTCCAAAAATTTGCCTGATATGTTCGGCAACATTTGATGACCTCAACGAATTCTTTGAACATGTCACCTACAAACATGAAATGGGCAATCTTAAAGCTTGTCTAAAATGCGATCGTTGTTTTAAGGATGAAAAACTATATAAAAGCCATATGAAGAAACATAATTCAAAGCCTTCGTACGATTGTTCACAATGTCATAAAAAATATGAATATCGCCATAATTTACTAACACATATGGCAACCTATCACAATTACAAAACCAAATACTTGCAGTGTGAATATTGTCATAAACAATTTGTCAGCAGTAATAGTTACCGCAAGCATCAGAAATTTCATTTGCCCGAAACGGAAGTCCATGCCTACGTTTGCATCGAGTGTGGACTAGTTGGCAGTGAAAGTGATACGTTGAAAATGCACACAGAAATTGATTCATCGTCTCCGTGCTTCAACGCTGAAATTGTTGAGCAGATAGTTACTGTAGTTTATAATTGTGAAAATTGCAGTTTGGATTTTGAAAATGTAAAACAGCTCAAGAAACATCGTTTATCGTCGCCCACCCATCGTGATGATTTATTCAAGTGCTCACTTTGTGATAAAGCGCACGACGATTATAGACGTATGCGTAATCATGTGAAAACTCATAAAACCTATGAACATTGGCAGGAAAATTTCCCAGTCTGCCGTTTGTATGTGTGCAATAAACAGAACTGTGAGGAATCTTATCCTCTGTGGTCGTCTCTTTATTATCATAAAAAGCGTCCCCATCGAAAACTAAATGCTGATAAGATTTCTAAACTTGATTTCAAATGTCAGTTTTGCAAAAAACTTTGTCCCACCAAAATGTCTTTAGCTGTACACGTGGCCCGCAGTCACAATAACAAATACCTGAAATGCTCTTATTGCCATTATTCGTACAAGGACGAAAAATGCCTACAGGAGCACATTGACTACATGCACACGCCCGTAACATGTGATCAATGCTTTAAAACCATCAAAAATCGTAAAAACTTTGAAATCCACAAACATGTCGTTCATCAGCATACGCAACGGTATTTTTGCAGTGTTTGCCAGAAAGGCTTCTATCATCGCAGCGAAATGGAAAATCACGAAAAAACAGCACACACACAAATAACGTATAATTGCGAACTATGCGGGTTCACTACCAATTATCAAAAATCTATGGACATTCACATGGCTAAACATAATAATCAAAAGGAATTTCGCTGCGAATTGTGTTCAAAGCAGTTCACCCGCAAACACGTTCTAAAGCAACACATGCGACGATATCACGAAAATAAGGAATTCTTTTGCCCTCATTGTGAAGATGCTTTCATTAATCTCCGATTGTTACAAAAACATTGTGCAGAAAACCATAAGGGATTAGAAAATGAACCTCTAAAGAAAAGGTTTAAGAAATCATCAGATTCTCAAATGCCATTACGAGAGCACCGTTCATTAGAGGCAGACTCAAGCGAGACCTTAGAAATTAAAGAACTGATTGAAGAAATCTACGTGGATGACAATCTTCAAGTGAATGATTTCGATGATTTAAGTTATACTGTATAA
Protein Sequence: MTVKSDVCLHCNFANCESADESRQFQDLFDELGTELQLVKLVEKFFHLKVLETNNQKLCEDCVNHLIELVDLEEHGKRSDERHSQTVSETECEFESVNDDDQLSNEFCEQILSDGNDETESSQFESVLITTEDISFDSVTNEANSVKMLSPESNVASKNELDYHDALFEEIAENSHSNQANTDDEYEKVFNEVYVVQEDTQSSDIDFAGSDCDEVEAENGSCSADYVEAQELFNGTFYFNYIKRIMDYIKFPEIPSSLVVDRVDFNGYLDLALSTEFENLELRWTTECKLCLGKYETLQELLTHTCLTKQASEENFVCLFKGCDEVLTNIKHLARHIVIRHYRNLESLKIYGSCPECECNFSEFTQYNKHSCCRHLRRIPGVGNTCKFCNLSFQSFKRYIFHMQFHLQKHRPKICLICSATFDDLNEFFEHVTYKHEMGNLKACLKCDRCFKDEKLYKSHMKKHNSKPSYDCSQCHKKYEYRHNLLTHMATYHNYKTKYLQCEYCHKQFVSSNSYRKHQKFHLPETEVHAYVCIECGLVGSESDTLKMHTEIDSSSPCFNAEIVEQIVTVVYNCENCSLDFENVKQLKKHRLSSPTHRDDLFKCSLCDKAHDDYRRMRNHVKTHKTYEHWQENFPVCRLYVCNKQNCEESYPLWSSLYYHKKRPHRKLNADKISKLDFKCQFCKKLCPTKMSLAVHVARSHNNKYLKCSYCHYSYKDEKCLQEHIDYMHTPVTCDQCFKTIKNRKNFEIHKHVVHQHTQRYFCSVCQKGFYHRSEMENHEKTAHTQITYNCELCGFTTNYQKSMDIHMAKHNNQKEFRCELCSKQFTRKHVLKQHMRRYHENKEFFCPHCEDAFINLRLLQKHCAENHKGLENEPLKKRFKKSSDSQMPLREHRSLEADSSETLEIKELIEEIYVDDNLQVNDFDDLSYTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00748517; iTF_00749293; iTF_00747030;
90% Identity: iTF_00748517;
80% Identity: -