Gfus009385.1
Basic Information
- Insect
- Glossina fuscipes
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold467:117244-123042[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.079 6.3 7.6 0.3 1 23 298 323 298 323 0.89 2 17 4.1 3.3e+02 2.2 4.7 2 19 335 352 335 354 0.94 3 17 0.49 40 5.1 0.2 3 23 397 418 396 418 0.91 4 17 0.00047 0.038 14.6 4.5 3 23 426 446 425 446 0.97 5 17 0.00072 0.058 14.0 5.5 1 23 452 475 452 475 0.97 6 17 0.00029 0.023 15.3 5.0 2 23 483 504 482 504 0.96 7 17 1.9 1.6e+02 3.2 0.0 1 20 513 532 513 534 0.91 8 17 0.013 1 10.1 0.7 1 21 554 574 554 579 0.93 9 17 0.6 48 4.8 3.3 1 23 584 606 584 606 0.97 10 17 0.028 2.3 9.0 0.5 1 23 622 647 622 647 0.97 11 17 0.03 2.4 8.9 2.1 1 23 660 683 660 683 0.96 12 17 0.0043 0.34 11.6 4.2 2 23 689 711 688 711 0.93 13 17 0.043 3.4 8.4 2.4 2 23 715 737 714 737 0.94 14 17 0.00031 0.025 15.2 2.3 1 23 743 766 743 766 0.97 15 17 0.0098 0.79 10.4 0.6 1 23 771 793 771 793 0.98 16 17 4.3e-05 0.0035 17.9 5.7 1 23 799 822 799 822 0.98 17 17 0.28 23 5.9 2.3 1 19 827 845 827 850 0.94
Sequence Information
- Coding Sequence
- ATGACCGTCAAATCAGACGTTTGTTTGCATTGCAATTTCGCTAATTGCGAATCGGCAGATGAAAGCAGGCAGTTTCAGGATTTATTCGATGAATTGGGAACGGAATTGCAACTAGTAAAATTAGTGGAAAAGTTTTTCCATTTAAAAGTGTTGGAAACTAACAACCAAAAATTATGTGAAGATTGTGTGAATCATTTAATTGAGTTAGTGGATTTGGAAGAGCATGGCAAAAGATCAGACGAGAGGCATTCGCAGACGGTTTCGGAAACTGAATGCGAATTTGAAAGTGTGAATGACGATGATCAGTTGTCTAATGAATTCTGCGAACAAATATTGTCGGATGGTAATGATGAAACCGAAAGTTCGCAATTTGAAAGCGTGCTCATAACAACTGAAGACATAAGCTTTGATAGCGTAACAAATGAAGCTAACTCGGTCAAGATGTTATCTCCGGAAAGTAATGTAGCGAGCAAAAACGAACTTGATTACCATGATGCATTATTTGAAGAGATAGCAGAAAGTTCACACAGTAATCAAGCAAACACGGATGATGAATATGAAAAAGTGTTTAACGAAGTATACGTAGTACAAGAAGATACCCAAAGTTCCGATATTGATTTTGCAGGTAGTGACTGTGACGAAGTTGAAGCTGAAAATGGAAGTTGTTCCGCAGATTATGTGGAAGCTCAAGAATTGTTCAATGAAATTCCTAGTTCTTTGGTTGTCGATCGTGTTGACTTTAACGGTTACTTAGACTTAGCTCTAAGTACCGAATTCGAAAATTTGGAGCTACGTTGGACTACCGAGTGCAAGTTGTGTTTGGGCAAATACGAGACATTACAGGAACTCTTAACGCACACTTGCCTCACGAAACAAGCCTCTGAAGAAAATTTCGTGTGTCTGTTCAAAGGTTGCGATGAAGTTTTAACAAATATCAAGCATTTAGCTAGACATGTTGTTATAAGGCATTATAGAAACTTAGAAAGCTTGAAAATCTATGGAAGCTGTCCCGAATGTGAATGTAACTTTTCAGAGTTTACACAATATAACAAGCATTCTTGTTGCCGTCATTTAAGACGAATACCCGGCGTAGGCAACACCTGCAAATTTTGTAATTTAAGTTTTCAATCATTCAAAAGATACATTTTTCATATGCAATTTCATTTGCAAAAACATCGTCCAAAAATTTGCCTGATATGTTCGGCAACATTTGATGACCTCAACGAATTCTTTGAACATGTCACCTACAAACATGAAATGGGCAATCTTAAAGCTTGTCTAAAATGCGATCGTTGTTTTAAGGATGAAAAACTGTATAAAAGCCATATGAAGAAACATAATTCAAAGCCTTCGTACGATTGTTCACAATGTCATAAAAAATATGAATATCGCCATAATTTACTAACACATATGGCAACCTATCACAATTACAAAACCAAATACTTGCAGTGTGAATATTGTCATAAACAATTTGTCAGCAGTAATAGTTACCGCAAGCATCAGAAATTTCATTTGCCCGAAACGGAAGTCCATGCCTACGTTTGCATCGAGTGTGGACTAGTTGGCAGTGAAAGTGATACGTTGAAAATGCACACAGAAATTGATTCATCGTCTCCGTGCTTCAACGCTGAAATTGTTGAGCAGATAGTTACTGTAGTTTATAATTGTGAAAATTGCAGTTTGGATTTTGAAAATGTAAAACAGCTCAAGAAACATCGTTTATCGTCGCCCACCCATCGTGATGATTTATTCAAGTGCTCACTTTGTGATAAGGCGCACGACGATTATAGACGTATGCGTAATCATGTGAAAACTCATAAAACCTATGAACATTGGCAGGAAAATTTCCCAGTCTGCCGTTTGTATGTGTGCAATAAACAGAACTGTGAGGAATCTTATCCTCTGTGGTCGTCTCTTTATTATCATAAAAAGCGTCCCCATCGAAAACTAAATGCTGATAAGATTTCTAAACTTGATTTCAAATGTCAGTTTTGCAAAAAACTTTGTCCCACCAAAATGTCTTTAGCTGTACACGTGGCCCGCAGTCACAATAACAAATACCTGAAATGCTCTTATTGCCATTATTCGTACAAGGACGAAAAATGCCTACAGGAGCACATTGACTACATGCACACGCCCGTAACATGTGATCAATGCTTTAAAACCATCAAAAATCGTAAAAACTTTGAAATCCACAAACATGTCGTTCATCAGCATACGCAACGGTATTTTTGCAGTGTTTGCCAGAAAGGCTTCTATCATCGCAGCGAAATGGAAAATCACGAAAAAACAGCACACACACAAATAACGTATAATTGCGAACTATGCGGGTTCACTACCAATTATCAAAAATCTATGGACATTCACATGGCTAAACATAATAATCAAAAGGAATTTCGCTGCGAATTGTGTTCAAAGCAGTTCACCCGCAAACACGTTCTAAAGCAACACATGCGACGATATCATGAAAATAAGGAATTCTTTTGCCCTCATTGTGAAGATGCTTTCATTAATCTCCGATTGTTACAAAAACATTGTGCGGAAAACCATAAGGGATTAGAAAATGAACCTCTAAAGAAAAGGTTTAAGAAATCATCAGATTCTCAAATGCCATTACGAGAGCACCGTTCATTAGAGGCAGACTCAAGCGAGACCCTAGAAATTAAAGAACTGATTGAAGAAATCTACGTGGATGACAATCTTCAAGTGAATGATTTCGATGATTTAAGTTATACTGTATAA
- Protein Sequence
- MTVKSDVCLHCNFANCESADESRQFQDLFDELGTELQLVKLVEKFFHLKVLETNNQKLCEDCVNHLIELVDLEEHGKRSDERHSQTVSETECEFESVNDDDQLSNEFCEQILSDGNDETESSQFESVLITTEDISFDSVTNEANSVKMLSPESNVASKNELDYHDALFEEIAESSHSNQANTDDEYEKVFNEVYVVQEDTQSSDIDFAGSDCDEVEAENGSCSADYVEAQELFNEIPSSLVVDRVDFNGYLDLALSTEFENLELRWTTECKLCLGKYETLQELLTHTCLTKQASEENFVCLFKGCDEVLTNIKHLARHVVIRHYRNLESLKIYGSCPECECNFSEFTQYNKHSCCRHLRRIPGVGNTCKFCNLSFQSFKRYIFHMQFHLQKHRPKICLICSATFDDLNEFFEHVTYKHEMGNLKACLKCDRCFKDEKLYKSHMKKHNSKPSYDCSQCHKKYEYRHNLLTHMATYHNYKTKYLQCEYCHKQFVSSNSYRKHQKFHLPETEVHAYVCIECGLVGSESDTLKMHTEIDSSSPCFNAEIVEQIVTVVYNCENCSLDFENVKQLKKHRLSSPTHRDDLFKCSLCDKAHDDYRRMRNHVKTHKTYEHWQENFPVCRLYVCNKQNCEESYPLWSSLYYHKKRPHRKLNADKISKLDFKCQFCKKLCPTKMSLAVHVARSHNNKYLKCSYCHYSYKDEKCLQEHIDYMHTPVTCDQCFKTIKNRKNFEIHKHVVHQHTQRYFCSVCQKGFYHRSEMENHEKTAHTQITYNCELCGFTTNYQKSMDIHMAKHNNQKEFRCELCSKQFTRKHVLKQHMRRYHENKEFFCPHCEDAFINLRLLQKHCAENHKGLENEPLKKRFKKSSDSQMPLREHRSLEADSSETLEIKELIEEIYVDDNLQVNDFDDLSYTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00750757;
- 90% Identity
- iTF_00750757;
- 80% Identity
- -