Gmor011894.1
Basic Information
- Insect
- Glossina morsitans
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000652156:1255611-1264743[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.07 3.8 7.6 0.3 1 23 305 330 305 330 0.89 2 15 3.7 2e+02 2.2 4.7 2 19 342 359 342 361 0.94 3 15 0.35 19 5.4 0.2 3 23 404 425 403 425 0.92 4 15 0.00028 0.015 15.2 5.1 2 23 454 475 453 475 0.96 5 15 1.7 94 3.3 0.0 1 20 484 503 484 505 0.91 6 15 0.015 0.8 9.8 1.0 1 21 525 545 525 550 0.93 7 15 0.53 29 4.9 3.3 1 23 555 577 555 577 0.97 8 15 0.025 1.4 9.0 0.5 1 23 593 618 593 618 0.97 9 15 0.027 1.5 8.9 2.1 1 23 631 654 631 654 0.96 10 15 0.0038 0.21 11.6 4.2 2 23 660 682 659 682 0.93 11 15 0.038 2.1 8.5 2.4 2 23 686 708 685 708 0.94 12 15 0.00028 0.015 15.2 2.3 1 23 714 737 714 737 0.97 13 15 0.0087 0.48 10.5 0.6 1 23 742 764 742 764 0.98 14 15 3.9e-05 0.0021 17.9 5.7 1 23 770 793 770 793 0.98 15 15 2.8 1.5e+02 2.6 2.6 1 19 798 816 798 821 0.94
Sequence Information
- Coding Sequence
- ATGACCGTGAAATCAGATATTGACGTTTGTCTGCATTGCAATTTCACTAATTGCGAATCGGCAGATGAAAGCAGGCAGTTTCAGGATTTATTCGATGAATTGGGAACGGAATTGCAACTAGTAAAATTAGTGGAAAAGTTTTTCCATTTAAAAGTATTGGAAACTAATAATCAAAAATTATGTGAAGATTGCGTGAATCATTTAATTGAACTAGTGGATTTGGAAGAGCATGGCAGAAGATCAGACGAGAGGCATTCGCAGACAGTTTTGGAAACTAAATGCGAATTTGAAAGTGCGGATGACGATGATCAGTTGTCTAATGAATTCTGCGAAGTAGTACTGTCGGATGACAACGATGACACCGAAAGTTTTCAATTTGAAAGCGTACTCATAGCAACTGAAGATGTGAGCATTGATAACGTAACAAATGAAGCTAACTCGATGAAGACCTTATCTCCGGAAAGCAACGTAGCAAGCAAAAACGAACCTGATTATCATGATGCTTACCTTAAAGATGCATTATTTGAAGAAATGGCAGAAAATTCATGCAGTAATGAAGCAAACACGGATGACGGGGATGAAAAAGAGCTTAACGAAGAATACATAGTACAAGAAGAAACCCAGAGCTCCGATATTGATTTCGCAGATACTGACTGTGACGAGGTTGAAGCTGAAAATGAAAGTTGTTCCACAGATTATGTGGAAGCTCAAGAATTGTTCAATGAAATTCCTAGTTCTTCGGTTGTCGATCGTGTTGATTTTAACGGTTACTTAGATTTAGCACTAACTACCGAATTCGAAAATTTGGAGCTACGCTGGACTACCGAGTGCAAGTTGTGTTTGGGCAAATACGAGACATTGCAAGAGCTCTTAACGCACACTTGCCTCACGAAACAAGCCACTGAAGAAAATTTCGTGTGTCTGTTCAAAGGTTGCGATGAAGTTTTAACAAATATTAAGCATTTAGCTAGACATGTGGTGATAAGACATTATAAAAACTTGGAAAGCTTGAAAATCTATGGAAGCTGTCCTGAATGTGAATGTAACTTTTCAGAGTTTACACAATATAACAAGCATTCTTGCTGTCGTCATTTAAGACGAGTACCGGGCGTAGGCAACACATGCAAATTTTGTGATTTAAGTTTTCAATCAGTCAAAAGATACATTTTTCATATGCAATTTCATTTGCAAAAACATCGGCCAAAAATTTGCTTGATATGTTCGGCAACATTTGATGATCTCAATGAATTCTTTGAACATGTTAGTTATAAACATGAAATGGGCAATCTTAAGGCTTGTCTAAATACTCATACCTATCACAAAGACGCAACCTACCACAATTACAAAACCAAATACTTGCAGTGTGAGTATTGTCATAAACAATTTGTCAGCAATAATAGTTACCGCAAGCATCAGAAATTTCATTTGCCTGAAACGGAGGTCCATGCCTATGTTTGTATTGAGTGCGGACTAGTTGGCAGTGAAAGTGATACGTTGAAAATGCACACGGAAATCGATTCATCGTCTCCGTGCTTCAACGCTGATATTATTGAGCAGATAGTCACTGTAGTTTATAATTGTGAAAATTGCAGTTTAGATTTTGAAAATGTAAAACAGCTGAAGAAACATCGTTTATCGTCGTCCACGCATCGTGATGATTTATTTAAGTGCTCACTCTGTGATAAAGCACACGACGACTACAGACGTATGCGCAATCATGTGAAAACTCATAAAACCTATGAGCATTGGCAGGAAAATTTTCCAGTGTGCCGTTTGTATGTGTGCAATAAACAGAACTGTGAGGAATCTTATCCTCTGTGGTCATCTCTTTATTATCACAAAAAGCGTCCTCATAGAAAGCTAAATGCTGATAAAATTCCTAAACTTGATTTCAAATGTCAGTTTTGCAAAAAACTTTGTCCCACCAAAATGTCTTTAGCTGTACACGTGGCTCGTAGTCACAATAACAAATACCTGAAATGCTCTTATTGCCATTATTCGTACAAGGACGAAAAATGCCTACAGGAGCACATTGACTATATGCACACGCCCGTAACATGTGATCAATGCTTTAAAACCATAAAAAATCGTAAAAACTTTGAAATCCACAAACATGTCGTCCACCAGCATACGCAACGGTATTTTTGCAGTGTTTGCCAGAAAGGCTTCTATCACCGTAGCGAAATGGAAAATCACGAAAAGACAGCACATACACAAGTAACGTATAATTGCGAACTATGCGGGTTTACCACCAATTATCAAAAATCTATGGACATTCACATGGCTAAACATAATAATCAAAAGGAATTTCGCTGCGAATTGTGTTCAAAGCAGTTCACCCGCAAACACGTTCTAAAGCAACATATGCGACGATATCATGAAAATAAAGAATTCTTTTGCCTTCATTGCGAAGATGCTTTTATTAATCTCCGATTGTTGCAAAAACATTGTGCAGAAAACCATAAAGGATTAGGAAATGAACCTCTAAGGAAAAGATTTAAGAAATCGTCGGACTCTCAAATGACATTACGAGAGCAGCGTTCATTAGAGGCAGATTCAAGCGAGACCCTAGAAATTAAAGAACTGATTGAAGAAATTTATGTGGATGACAATCTTCAAGTGAATGATTTCGACGATTTGAGTTATACTGTATAA
- Protein Sequence
- MTVKSDIDVCLHCNFTNCESADESRQFQDLFDELGTELQLVKLVEKFFHLKVLETNNQKLCEDCVNHLIELVDLEEHGRRSDERHSQTVLETKCEFESADDDDQLSNEFCEVVLSDDNDDTESFQFESVLIATEDVSIDNVTNEANSMKTLSPESNVASKNEPDYHDAYLKDALFEEMAENSCSNEANTDDGDEKELNEEYIVQEETQSSDIDFADTDCDEVEAENESCSTDYVEAQELFNEIPSSSVVDRVDFNGYLDLALTTEFENLELRWTTECKLCLGKYETLQELLTHTCLTKQATEENFVCLFKGCDEVLTNIKHLARHVVIRHYKNLESLKIYGSCPECECNFSEFTQYNKHSCCRHLRRVPGVGNTCKFCDLSFQSVKRYIFHMQFHLQKHRPKICLICSATFDDLNEFFEHVSYKHEMGNLKACLNTHTYHKDATYHNYKTKYLQCEYCHKQFVSNNSYRKHQKFHLPETEVHAYVCIECGLVGSESDTLKMHTEIDSSSPCFNADIIEQIVTVVYNCENCSLDFENVKQLKKHRLSSSTHRDDLFKCSLCDKAHDDYRRMRNHVKTHKTYEHWQENFPVCRLYVCNKQNCEESYPLWSSLYYHKKRPHRKLNADKIPKLDFKCQFCKKLCPTKMSLAVHVARSHNNKYLKCSYCHYSYKDEKCLQEHIDYMHTPVTCDQCFKTIKNRKNFEIHKHVVHQHTQRYFCSVCQKGFYHRSEMENHEKTAHTQVTYNCELCGFTTNYQKSMDIHMAKHNNQKEFRCELCSKQFTRKHVLKQHMRRYHENKEFFCLHCEDAFINLRLLQKHCAENHKGLGNEPLRKRFKKSSDSQMTLREQRSLEADSSETLEIKELIEEIYVDDNLQVNDFDDLSYTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00750757;
- 90% Identity
- -
- 80% Identity
- -