Basic Information

Insect: Glossina palpalis
Gene Symbol: gnptab
Assembly: GCA_000818775.1
Location: Scaffold59:98274-106564[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.049 3.9 8.3 0.1 2 23 853 875 852 875 0.95

2 10 1.2 92 3.9 0.7 6 23 884 901 884 901 0.98

3 10 0.00013 0.011 16.3 0.9 1 23 907 930 907 930 0.95

4 10 5.9e-05 0.0047 17.4 1.8 1 23 938 961 938 961 0.93

5 10 0.00058 0.046 14.3 1.6 2 23 967 988 966 988 0.96

6 10 0.21 17 6.3 0.0 2 23 993 1014 992 1014 0.95

7 10 2.7 2.2e+02 2.8 2.5 2 23 1023 1044 1022 1044 0.89

8 10 0.066 5.2 7.9 0.4 1 23 1051 1074 1051 1074 0.94

9 10 2.4e-05 0.0019 18.7 0.9 1 23 1080 1102 1080 1102 0.98

10 10 3e-05 0.0024 18.4 5.3 1 23 1108 1131 1108 1131 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.049	3.9	8.3	0.1	2	23	853	875	852	875	0.95
2	10	1.2	92	3.9	0.7	6	23	884	901	884	901	0.98
3	10	0.00013	0.011	16.3	0.9	1	23	907	930	907	930	0.95
4	10	5.9e-05	0.0047	17.4	1.8	1	23	938	961	938	961	0.93
5	10	0.00058	0.046	14.3	1.6	2	23	967	988	966	988	0.96
6	10	0.21	17	6.3	0.0	2	23	993	1014	992	1014	0.95
7	10	2.7	2.2e+02	2.8	2.5	2	23	1023	1044	1022	1044	0.89
8	10	0.066	5.2	7.9	0.4	1	23	1051	1074	1051	1074	0.94
9	10	2.4e-05	0.0019	18.7	0.9	1	23	1080	1102	1080	1102	0.98
10	10	3e-05	0.0024	18.4	5.3	1	23	1108	1131	1108	1131	0.98

Sequence Information

Coding Sequence: ATGTTTGCAAGTAGGAAATTGTGTCATCGTAAACTACGTAAATACAAATATCGTTTGCTGGCCATTTTTATAGTGCTTGTTATAATCTTTCTAGCTTATCAAAAGTTTTATCCATCCCATAATCTTAATGGTTCGATTTGTGAACCTATCGATGTTGTTTACACTTGGGTGAATGGCACTGATCCCTTTTTTGTCAATAACATAGTTAAATTTGATCCAAATTATGACGCAACGCGCTATGATGATAAAAATGAGTTACGCTATTCTCTGCGTTCTTTAGAAAAGTATGCTCCCTGGATACGACACGTTTATATAATTACAAATGGACAAATACCATATTGGTTGGATTTAAGCAACGAACGCGTAACTGTAGTACCTCATGAGCTCTTAACTCCATATCCAAGTTGGTTACCTACTTTCTCCAGCTCAGCAATTGAAACATTTCTACATCGAATTCCAAATTTATCGCAAAGATTTCTTTATCTAAACGATGACGtttttttAGGCGACTATCTGTATCCGGAGGATTTGTATACGGACTCGGAAGGAGTGCGAGTATATCAGGCGTGGTTGGTTCCAGACTGTGCAGAAGATTGCCCTTGGACTTATATAGGAGATGGTTCATGTGATAAACATTGTAATATAGCAAACTGTCAATATGACGGTGGTGACTGTTCACTGGAAACCAATAACTCAAATAACATTAATGAACACCTAGTTAATCGCAGTAAAGAACATAAAGATCTTTTTGAACTTTTAAAGGCGAACACTACCACCGCACGGGTAGCAGCTCATTCGCATATACGAAAATTTCCTAAAAGGaaaaaaaGTTCCTTCAATTTTAGTAATTTACCTAAAAATTCGTCATTTAGAGATTTGTTACATTATCATAGAAATCTTACTTACGCTCAAGACTTTAAGCAAATGGTAGAAAATTATAATAAACGCCAACAGGAGAGAATAAAACCCAGTGTAAGCGCTATGAAAACTAGTAAAGCATCAATGAACCAAAGCCACGGGAAAAGAATCAAACCCAGGGATATATTTTCACAGTCATTGATATACACAAATATGCTACTAAATCGCTGCTACGGTTTTAAAGCCCGCCATGTGCTGGCTCATGTTGGCTTTCTACTAGAACGTACTATAATAGAAGCTATGCAAGAGAAATTTGCACCTGAAATTTTTAATACAGCCTCTCATCGTTTCCGCTCCGCAAACGATATACAATTTGCTTTTGCTTATTATTCATTTCTAATGGAAGAAACTCGTACAACCAGTGTACGGGAAATATTTTCTGAATTTGACACCGATCATTCCCATTCATGGTCAGATCGAGAAATACGCACTTTATTGACGAGAACATTTCCTCTACCTTTAGACGTGTCAACATTGCACTTTTTTGAAGAAATAATTAATAATTGCAGTCGTTATTACGATTCGAAAGAAATAGATCAGTCTATTTACACTACCTTGGTATATGAACGATATATGGATTCGAATTTACCCAGAATTACAAGGGATTTTGTGGAAAAATGTTTGCCATTGGCACAAGCTTTAGAGGAAAATTTTTCATCGAGATTCAAATACAAATTTCATATTAATTCAAAACGCTCTCTAAATAGTAATTTTATGATGCTTACCTCCAACATAACTCAAGTGGCCGAAGCTCTAGACAAAATTCGTAAAGTTCCGAGAAAATTCAATTGCATTAACGATAACATGGAGCCCGGTATAGACGATAATGATCTTATACGTCAATTATTAGAAGATTTCTACTTATCGTTCTTCCCCGTTCGCAGTCAATTCGAATTGCCTTTGCAATATCGCAATCGATTTGAAAATTGGCATGATTATCAACGATGGCGTCGACGAAAACGTGCTGCTTTAGCATTAGGTTACGGTGTAAGTGCCATTTTAATAACTTTTGCGAGACAACGACATCACTTTTTAGAGGATGATCTGATTCCCTCCAGTTCTTTGCCCAGCAAAAGAGAACCTGATGATGAGTTCAATGAAATTAACGATGAGGTTCCTTTTGATATGCTAATGGGTGTAGCATCTGATGATAGGCATAAAACTGTCGCCAAAGCCGCGGCTATAGCTTTGGGAAGAGCTGAAGAAGATTCACATGATGCTTTAACAACGCATGATTTTAGTAACAACTCTATGGAAGATGTTGAAGTTCCCAATTATGAAGATGAAAAATTTGATAGCCATGATGATGACACATTTGACGGTGAAGCGTTCATGAAAAATATATTAATAAATGACAATGCAAAAGATACTAAACCAGTAAAAGAGGAAACGATTACTGAATCAATCCAACCTATAGGAATTAGAGTGACAAGATCATCGTCTAAATTGCAGCATAATGCACATATAACCCAAACGATATTTTCAAGCAAAAACGTaaaaaaaGGCCCTGGAAGACCACGAAAAGCTGAAATCGGCTCCTCAAAAGAAGCGAAAGACAAAAAAGCACCTGAAGAGTCGGAAGCTTACCGCAATAAAAGCTTAGCCATCGACAGAGAAATATCCAAGTACATGTCATTGCATTGTGAAATCTGCAATGGAGAAGTAACAAATTTTGCTGCTCTTAAAGGCCATATGCGTGTCGAGCataatgttaaagGTTACGCTAGATGTTGTAACAAAAAATTTCTTAAGCGAGTCTTACTTCTAGAGCACATACGTAAACACTTAAATCCGGATTGTTACAAATGTGATGAATGTAATCGGGTTTTTGCCGATCGCCAATCTATGCGTAATCATTTCCTTATCAAACATCAGAAGGATGAAGATAAAACCTTTACGTGCCAACAGTGCCCTAAGAAATTTGTTAGAAAGTATTTACTTGAACAACATAAAATGTTTGCCCATGGAGATCGTACGACCACTTGTAAGAGTTGCAATAAACGTTTCGATACTGCAGCCCAATTATCAACTCATACCAAAGAGCATTGCTACGGCGTAATGTGCGACATCTGTGCCAAAGTTATACGTGGCACTGCAGCCTTTCAGCGTCACCAATTGGAACATCAAGGCATTTCTTTCCCCAAAGTGCAATGCGACGAATGCGGGTCATGGCACAAAGACAAATACACGCTTAACAAACATAAGAAGCGTCATGAGCAGTCCAAGGAGTTGCACGTCTGCGATATTTGCCAAAAGGTATCGCCAAGTCGTCCTGCAATGTTGAGCCATAAACGTTTTGTGCACAATCCATTGCGTTCCTTCGAATGCAATGTGTGCAAAAAGAATTTTAAAAAAGCCATATATTTAAAAGAGCACATGGCCTCGCATACAGGCGAAGTGTTGTATCGTTGCCCTCATTGCCCGAAAACTTTTAATTCCAATGCTAATATGCATTCACATCGCaaaaaaaTGCATCCGCAAGAATTTGAAGAAACTCGTAAATTAAGGCGTGAAAACGCTCACTTACCAGAGCCACCTATGCCGTCAATATCATCCCTGAGTAATGTCAGAAAATTACCAACAGAGACAAAAACCTTACTTGTTATAGACAGTCAACAGAATAAAGTTACAGAAAGTATTTTCGTCACATCAGCAACAGCCAATGTGTGA
Protein Sequence: MFASRKLCHRKLRKYKYRLLAIFIVLVIIFLAYQKFYPSHNLNGSICEPIDVVYTWVNGTDPFFVNNIVKFDPNYDATRYDDKNELRYSLRSLEKYAPWIRHVYIITNGQIPYWLDLSNERVTVVPHELLTPYPSWLPTFSSSAIETFLHRIPNLSQRFLYLNDDVFLGDYLYPEDLYTDSEGVRVYQAWLVPDCAEDCPWTYIGDGSCDKHCNIANCQYDGGDCSLETNNSNNINEHLVNRSKEHKDLFELLKANTTTARVAAHSHIRKFPKRKKSSFNFSNLPKNSSFRDLLHYHRNLTYAQDFKQMVENYNKRQQERIKPSVSAMKTSKASMNQSHGKRIKPRDIFSQSLIYTNMLLNRCYGFKARHVLAHVGFLLERTIIEAMQEKFAPEIFNTASHRFRSANDIQFAFAYYSFLMEETRTTSVREIFSEFDTDHSHSWSDREIRTLLTRTFPLPLDVSTLHFFEEIINNCSRYYDSKEIDQSIYTTLVYERYMDSNLPRITRDFVEKCLPLAQALEENFSSRFKYKFHINSKRSLNSNFMMLTSNITQVAEALDKIRKVPRKFNCINDNMEPGIDDNDLIRQLLEDFYLSFFPVRSQFELPLQYRNRFENWHDYQRWRRRKRAALALGYGVSAILITFARQRHHFLEDDLIPSSSLPSKREPDDEFNEINDEVPFDMLMGVASDDRHKTVAKAAAIALGRAEEDSHDALTTHDFSNNSMEDVEVPNYEDEKFDSHDDDTFDGEAFMKNILINDNAKDTKPVKEETITESIQPIGIRVTRSSSKLQHNAHITQTIFSSKNVKKGPGRPRKAEIGSSKEAKDKKAPEESEAYRNKSLAIDREISKYMSLHCEICNGEVTNFAALKGHMRVEHNVKGYARCCNKKFLKRVLLLEHIRKHLNPDCYKCDECNRVFADRQSMRNHFLIKHQKDEDKTFTCQQCPKKFVRKYLLEQHKMFAHGDRTTTCKSCNKRFDTAAQLSTHTKEHCYGVMCDICAKVIRGTAAFQRHQLEHQGISFPKVQCDECGSWHKDKYTLNKHKKRHEQSKELHVCDICQKVSPSRPAMLSHKRFVHNPLRSFECNVCKKNFKKAIYLKEHMASHTGEVLYRCPHCPKTFNSNANMHSHRKKMHPQEFEETRKLRRENAHLPEPPMPSISSLSNVRKLPTETKTLLVIDSQQNKVTESIFVTSATANV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00748530;
90% Identity: iTF_00748530; iTF_00749988; iTF_00749271; iTF_00747019;
80% Identity: -