Basic Information

Insect: Glossina pallidipes
Gene Symbol: gnptab
Assembly: GCA_000688715.1
Location: Scaffold317:280980-286563[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.05 3.9 8.2 0.1 2 23 892 914 891 914 0.95

2 10 1.2 91 3.9 0.7 6 23 923 940 923 940 0.98

3 10 0.00014 0.011 16.3 0.9 1 23 946 969 946 969 0.95

4 10 6.6e-05 0.0051 17.3 3.5 1 23 977 1000 977 1000 0.93

5 10 0.00059 0.046 14.3 1.6 2 23 1006 1027 1005 1027 0.96

6 10 0.22 17 6.2 0.0 2 23 1032 1053 1031 1053 0.95

7 10 2.8 2.1e+02 2.7 2.5 2 23 1062 1083 1061 1083 0.89

8 10 0.067 5.1 7.8 0.4 1 23 1090 1113 1090 1113 0.94

9 10 2.5e-05 0.0019 18.6 0.9 1 23 1119 1141 1119 1141 0.98

10 10 3e-05 0.0023 18.3 5.3 1 23 1147 1170 1147 1170 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.05	3.9	8.2	0.1	2	23	892	914	891	914	0.95
2	10	1.2	91	3.9	0.7	6	23	923	940	923	940	0.98
3	10	0.00014	0.011	16.3	0.9	1	23	946	969	946	969	0.95
4	10	6.6e-05	0.0051	17.3	3.5	1	23	977	1000	977	1000	0.93
5	10	0.00059	0.046	14.3	1.6	2	23	1006	1027	1005	1027	0.96
6	10	0.22	17	6.2	0.0	2	23	1032	1053	1031	1053	0.95
7	10	2.8	2.1e+02	2.7	2.5	2	23	1062	1083	1061	1083	0.89
8	10	0.067	5.1	7.8	0.4	1	23	1090	1113	1090	1113	0.94
9	10	2.5e-05	0.0019	18.6	0.9	1	23	1119	1141	1119	1141	0.98
10	10	3e-05	0.0023	18.3	5.3	1	23	1147	1170	1147	1170	0.98

Sequence Information

Coding Sequence: ATGTTTACAAGTAGGAAATTGTGTCATCGTAAACTACGTAAACACAAATATCGTTTGCTGGCCTTTTTTATAGTGCTTGTTATAATCTTTCTAGCTTATCAAAAGTTTTATTCATCCCATAATCTTAATGGTTCGATTTGTGAGCCTATCGATGTTGTTTACACTTGGGTGAATGGCACTGATCCCTTTTTTATCAATAACATAGTCAAATTTGATCCAAATTATGATGTAACGCGGTTTGATGATAAAAATGAGTTACGCTATTCTCTGCGTTCTTTAGAAAAATATGCTCCTTGGATACGACATGTTTATATAATTACAAATGGACAAATACCATATTGGTTGGATTTAAGCAACGAACGCGTAACTGTAGTACCTCATGAGCTCTTAACTCCATATCCAAATTGGTTACCTACTTTCTCCAGCTCAGCAATTGAAACATTTATACATCGTATACCAAATTTATCGCAAAGATTTCTTTATCTAAATGATGACATTTTTCTTGGCGACTATCTGTACCCGGAGGACTTATATACGGACTCGGAAGGAGTGCGAGTATATCAGGCGTGGTTGGTTCCAGATTGTGCTGAAGATTGCCCTTGGACTTATATAGGAGATGGTTCATGTGATAAGCATTGTAATATAGCAAACTGTCAATATGACGGTGGCGACTGCTCATTGGAAAACAACTCAAATAACAATAATGAACACCTAGTTAATCACAGTAAAGAACATAAAGATCTTTTTGAACTTTTAAAAGCGAATACTACCACCGCACGGGTAGCAGCTCATTCGCATACACGAAAATTTCCTAAGAGGaaaaaaaGTCCCTTCAATTTTAGTAATTTACCTAGAAATTCGTCATTTAGAGATTTGTTACATTATCATAGAAATCTTACTTACGCTCAAGACTTCAAGCAAATGGTAGAAAATTACAATAAACGCCAACAGGAGAAAATAAAACCTAGTGTAAGCGCCATGAAAACTAGTAAAGCATCAATGAACCAAAGCCACGGAAAAAGAATCAAACCTAAGGATATATTTTCACAGTCGTTGATATACACAAATATGCTACTAAATCGCTGTTACGGTTTTAAGGCCCGTCATGTGCTAGCTCATGTTGGCTTCCTACTCGAACGTACCATAATAGAAGCTATGCAGGAGAAATTTGCTCATGAAATTTTTAATACAGCCTCGCATCGTTTCCGTTCCTCAAACGATATACAATTTGCTTTTGCTTATTATTCATTTCTAATGGAAGAAACTCGTGCAACCAGTGTACGTGAAATATTTTCTGAATTTGACACCGATCATTCCCAAACGTGGTCAGATCGAGAAATACGCACTTTATTGGCGAGGACATTTCCTCTACCTTTAGACGTGTCAACATTGCACTTTTTTGAAGAAATAATTAATAATTGCAGTCGTTATTATGATTCGAAAGAAACAGATCAAGGTATTTATACTACCTTGGTGTATGAACGATATGTAGATTCGAATTTGCCCAGAATTACAAGGGACTTTGTGGAAAAATGTTTGCCGTTGGCACAAGCTTTAGAGGAAAATTTTTCATCGAGATTCAAATACAAATTTCATATTAATTCAAAACGCTCTCTAAATAGTAATTTTATGATGCTTACCTCCAATATCACTCAAGTGGCCGAAGCTCTAGACAAAATTCGCAAAATTCCTAGAAAATTCAATTGCATTAACGATAACATGGAGCCCGGTTTAGATGATAATGATCTGATACGTCAATTATTAGAAGATTTCTACTTGTCGTTCTTCCCCGTTCGTAGTCAATACGAATTGCCGTTGCAATATCGCAATCGATTTGAAAATTGGCATGATTATCAACGGTGGCGTCGTCGAAAACGTGCTGCTTTAGTATTAGGTTACGGTCCACTTCAAGATGATCCAATATCTACAGTTATTTGCAATCCATGTTGGTTTAAAGTCTCCGATTTTCATGAGTTTTATGAGAGTGTGGAAGAAGCTCAACGTCAGTTGAGCGAAACATTTCTAGTGAAAATAGAAAGTCAAACTAAGGCGAAACAACGACACCACTTTTTAGAGGATGATCTGATTCCCTCCAGTTCTTTGCCCAGCAAACGAAAACCTGATGATGAGTTCAATGAAATTAACGATGAGGTTCCTTTTGATATGCTAATGGGTGTAGCATCTGATGATAGGCATAAAACTGTTGCCAAAGCGGCGGCTATAGCTTTAGGAGCTGAAGAAGATTCACATGATGTTTTAACAACCCATGATTTTAGTAACAACTCTATGGAAGATGTTGAAGTTCCCAATTATGAGGATGAAAAATTTGACAGCCATGATGATGACACATTCGACGGTGAAGCGTTCATGAAAAATATATTAATAAGTGACAATGCAAAAGATACTAAACCAGTAAAAGAGGAAACGATTACTGAATCAATCCAACCTATAGGAATTAGAGTGACAAGGTCTTCATCTAAATTGCAGCATAATGCACATCTAACTCAAAAGGTTTTCTCAAGCAAAACCGTaaaaaaaGGTCCCGGAAGGCCGCGAAAAGCTGACATCGGCTCATCAAAAGAAGTGAAAGACAAAAAACCACCTGAAGAGTCGGAAGCGTATCGCAATAAAAGCTTAGCCATCGATAGAGAAATATCCAAGTACATGTCATTGCATTGTGAAATCTGCAATGGAGAAGTAACAAATTTTGCTGCTCTTAAAGGCCATATGCGTGTCGAGCATAATGTTAAAGGTTATGCTAGATGTTGCAACAAAAAATTTCTTAAGCGCGTTTTACTTCTAGAGCACATACGTAAACACTTAAATCCGGATTGTTACAAATGTGATGAATGTAATAGGGTTTTTGCCGATCGCCAATCTATGCGTAATCATTTTCTTATCAAACATCAGAAGGATGAAGATAAAACCTTTACGTGCCATCAGTGCCCTAAGAAATTTGTAAGAAAGTATTTACTGGAACAACACAAAATGTTTGCGCATGGAGATCGTACCACCACTTGTAAAAGCTGCAATAAACGTTTTGATACTGCAGCCCAATTATCAACTCATACCAAAGAGCATTGCTACGGAGTAATGTGCGACATTTGCGCCAAAGTTATACGCGGCACTGCTGCCTTTCAGCGACACCAGTTGGAACATCAAGGCATTTCTTTCCCCAAAGTGCAATGCGACGAATGCGGGTCTTGGCACAAAGACAAATACACGCTTAACAAACATAAGAAACGTCATGAGCAGTCCAAAGAGTTGCACGTCTGCGATATTTGCCAAAAAGTATCGCCTAGTCGTCCTGCCATGTTGAGCCATAAACGTTTTGTGCACAATCCCTTGCGTTCCTTCGAATGCAATGTGTGCAAAAAGAATTTTAAAAAAGCCATATATTTAAAGGAACACATGGCCTCGCATACAGGCGAAGTCTTGTATCGTTGCCCTCATTGCCCGAAAACTTTTAATTCCAATGCTAATATGCATTCACATCGCaaaaaaaTGCATCCGCAAGAATTTGAAGAAACCCGTAAATTAAGGCGTGAAAACGCTCATTTACCAGAACCACCTATGCCGTCAATATCATCCCTGAGTAATGTCAGAAAATTGCCAACAGAGACAACAACTTTACTTGTTATGGACAGTCAACAAAATAAAGTTACAGAAAATATTTTCGTAACATCAGCAACAGGCAATGTGTGA
Protein Sequence: MFTSRKLCHRKLRKHKYRLLAFFIVLVIIFLAYQKFYSSHNLNGSICEPIDVVYTWVNGTDPFFINNIVKFDPNYDVTRFDDKNELRYSLRSLEKYAPWIRHVYIITNGQIPYWLDLSNERVTVVPHELLTPYPNWLPTFSSSAIETFIHRIPNLSQRFLYLNDDIFLGDYLYPEDLYTDSEGVRVYQAWLVPDCAEDCPWTYIGDGSCDKHCNIANCQYDGGDCSLENNSNNNNEHLVNHSKEHKDLFELLKANTTTARVAAHSHTRKFPKRKKSPFNFSNLPRNSSFRDLLHYHRNLTYAQDFKQMVENYNKRQQEKIKPSVSAMKTSKASMNQSHGKRIKPKDIFSQSLIYTNMLLNRCYGFKARHVLAHVGFLLERTIIEAMQEKFAHEIFNTASHRFRSSNDIQFAFAYYSFLMEETRATSVREIFSEFDTDHSQTWSDREIRTLLARTFPLPLDVSTLHFFEEIINNCSRYYDSKETDQGIYTTLVYERYVDSNLPRITRDFVEKCLPLAQALEENFSSRFKYKFHINSKRSLNSNFMMLTSNITQVAEALDKIRKIPRKFNCINDNMEPGLDDNDLIRQLLEDFYLSFFPVRSQYELPLQYRNRFENWHDYQRWRRRKRAALVLGYGPLQDDPISTVICNPCWFKVSDFHEFYESVEEAQRQLSETFLVKIESQTKAKQRHHFLEDDLIPSSSLPSKRKPDDEFNEINDEVPFDMLMGVASDDRHKTVAKAAAIALGAEEDSHDVLTTHDFSNNSMEDVEVPNYEDEKFDSHDDDTFDGEAFMKNILISDNAKDTKPVKEETITESIQPIGIRVTRSSSKLQHNAHLTQKVFSSKTVKKGPGRPRKADIGSSKEVKDKKPPEESEAYRNKSLAIDREISKYMSLHCEICNGEVTNFAALKGHMRVEHNVKGYARCCNKKFLKRVLLLEHIRKHLNPDCYKCDECNRVFADRQSMRNHFLIKHQKDEDKTFTCHQCPKKFVRKYLLEQHKMFAHGDRTTTCKSCNKRFDTAAQLSTHTKEHCYGVMCDICAKVIRGTAAFQRHQLEHQGISFPKVQCDECGSWHKDKYTLNKHKKRHEQSKELHVCDICQKVSPSRPAMLSHKRFVHNPLRSFECNVCKKNFKKAIYLKEHMASHTGEVLYRCPHCPKTFNSNANMHSHRKKMHPQEFEETRKLRRENAHLPEPPMPSISSLSNVRKLPTETTTLLVMDSQQNKVTENIFVTSATGNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00748530;
90% Identity: iTF_00750754;
80% Identity: -