Basic Information

Insect: Glossina austeni
Gene Symbol: gnptab
Assembly: GCA_000688735.1
Location: Scaffold627:54530-60325[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.052 4 8.2 0.1 2 23 893 915 892 915 0.95

2 10 1.2 94 3.9 0.7 6 23 924 941 924 941 0.98

3 10 0.00014 0.011 16.3 0.9 1 23 947 970 947 970 0.95

4 10 6.9e-05 0.0052 17.3 3.5 1 23 978 1001 978 1001 0.93

5 10 0.00062 0.047 14.3 1.6 2 23 1007 1028 1006 1028 0.96

6 10 0.23 17 6.2 0.0 2 23 1033 1054 1032 1054 0.95

7 10 2.9 2.2e+02 2.7 2.5 2 23 1063 1084 1062 1084 0.89

8 10 0.07 5.3 7.8 0.4 1 23 1091 1114 1091 1114 0.94

9 10 2.6e-05 0.002 18.6 0.9 1 23 1120 1142 1120 1142 0.98

10 10 3.2e-05 0.0024 18.3 5.3 1 23 1148 1171 1148 1171 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.052	4	8.2	0.1	2	23	893	915	892	915	0.95
2	10	1.2	94	3.9	0.7	6	23	924	941	924	941	0.98
3	10	0.00014	0.011	16.3	0.9	1	23	947	970	947	970	0.95
4	10	6.9e-05	0.0052	17.3	3.5	1	23	978	1001	978	1001	0.93
5	10	0.00062	0.047	14.3	1.6	2	23	1007	1028	1006	1028	0.96
6	10	0.23	17	6.2	0.0	2	23	1033	1054	1032	1054	0.95
7	10	2.9	2.2e+02	2.7	2.5	2	23	1063	1084	1062	1084	0.89
8	10	0.07	5.3	7.8	0.4	1	23	1091	1114	1091	1114	0.94
9	10	2.6e-05	0.002	18.6	0.9	1	23	1120	1142	1120	1142	0.98
10	10	3.2e-05	0.0024	18.3	5.3	1	23	1148	1171	1148	1171	0.98

Sequence Information

Coding Sequence: ATGTTTACAAGTAGGAAATTGTGTCATCGTAAATTACGTAAACACAAATATCGTTTGCTGGCCACTTTTATAGTGCTTGTTATAATCTTTCTAGCTTATCAAAAGTTTTATTCATCCCATAATCTTAATGGTTCGATTTGTGAACCTATCGATGTTGTTTACACTTGGGTGAATGGCACTGATCCCTTTTTTATCAATAACATAGTCCAATTTGATCCAAATTATGATGTAACGCGCTTTGATGATAAAAATGAGTTACGCTATTCTCTGCGTTCTTTAGAAAAATATGCTCCTTGGATACGACATGTTTATATAATTACAAATGGACAAATACCCTACTGGTTGGATTTAAGCAACGAACGCGTAACTGTAGTACCTCATGAGCTCTTAACTCCATATCCAAATTGGTTACCTACTTTCTCCAGCTCAGCAATTGAGACATTTATACATCGTATACCAAATCTATCGCAAAGATTTCTTTATCTTAATGATGACATTTTTCTAGGCGACTATCTGTATCCGGAGGATTTATATACCGACTCGGAAGGAGTGCGAGTATATCAGGCGTGGTTGGTTCCGGATTGTGCTGAAGATTGCCCTTGGACTTATATAGGAGATGGTTCATGTGATAAGCATTGTAATATAGCAAACTGTCAATATGACGGTGGTGACTGCTCATTGGAAAACAACAACTCAAATAACAATAATGAACACCTAGTTAATCACAGTAAAGAACATAAAGATCTTTTTGAACTTTTAAAAGCGAATACTACCACCGCAAGGATAGCAGCTCATTCGCATACACGAAAATTTCCTAAAAGGaaaaaaaGTCCCTTTAATTTTAGTAATTTGCCTAGAAATTCGTCATTTAGAGATTTGTTACATTACCATAGAAATCTTACTTACGCTCAAGACTTCAAGCAAATGGTAGAAAATTATAATAAACGCCAGCAGGAGAAAATAAAACCTAGTGTAAGCGCTATGAAAGCTAGTAAAGCACCAATGAACCAAAGCCACGGGAAAAGAATCAAACCTAGGGATATATTTTCACAGTCATTGATATACACAAATATGCTACTAAATCGCTGCTACGGTTTTAAGGCCCGTCATGTGCTGGCTCATGTTGGCTTCCTACTCGAACGTACCGTAATAGAAGCTATGCACGAGAAATTTGCTCATGAAATTTTTAATACAGCCTCGCATCGTTTCCGTTCCTCAAACGATATACAATTTGCTTTCGCTTATTATTCATTTCTAATGGAAGAAACTCGTGCAACCAGTGTACGTGAAATATTTTCTGAATTTGACACCGATCATTCCCAAACGTGGTCAGATCGAGAAATACGCACTTTATTGGCGAGAACATTTCCTCTACCTTTAGACGTGTCAACATTGCACTTTTTTGAAGAAATAATTAATAATTGCAGTCGTTATTATGATTCGAAAGAAATAGATCAGGCCATTTATACTACCTTGGTATATGAACGATATGTAGATTCGAATTTGCCCAGAATTACAAGGGACTTTGTGGAAAAATGTTTGCCATTGGCACAAGCTTTAGAGGACAATTTTTCATCGAGATTCAAATACAAATTTCATATTAATTCAAAACGCTCTCTAAATAGTAATTTTATGATGCTTACCTCCAATATCACTCAAGTGGCCGAAGCTCTAGACAAAATTCGCAAAATTCCTAGAAAATTCAATTGCATTAACGATAACATGGAGCCCGGTCTAGATGATAATGATCTGATACGTCAATTGTTAGAAGATTTCTACTTGTCGTTCTTCCCCGTTCGTAGTCAATACGAATTGCCGTTGCAATATCGCAATCGATTTGAAAATTGGCATGATTATCAACGGTGGCGTCGTCGAAAACGTGCTGCTTTAGTATTAGGTTACGGTCCACTTCAAGATGATCCAATATCTACAGTTATTTGCAATACATGTTGGTTTAAAGTCTCCGATTTTCATGAGTTTTATGAAAGTGTGGAAGAAGCTCAACGTCAGCTGAGCGAAACATTTCTAGTGAAAATAGAAAGTCAAACTAAAGCGAAACAACGACATCACTTTTTAGAGGATGATCTGATTCCTTCCAGTTCTTTGCCCAGCAAAAGAGAACCTGATGATGAGTTCAATGAAATTAACGATGAGGTTCCTTTTGATATGCTAATGGGTGTAGCATCTGATGATAGGCATAAAACTGTCGCCAAAGCGGCGGCTATAGCTTTAGGAGCTGAAGAAGATTCACATGATGTTTTAACAACGCACGATTTTAGTAACAATTCTATGGAAGATGTCGAAGTTCCCAATTATGAAGATGAAAAATTTGACAGCCACGATGATGACACATTCGACGGCGAAGCGTTCATGAAAAATATACTAATAAATGACAATGCAAAAGATACTAAACCAGTAAAAGAGGAAACGATTACTGAATCAATCCAACCTATAGGAATTAGAGTGACAAGATCTTCATCTAAATTGCAGCATAATGCACATCTAACCCAAAAGGTTTTCTCAAACAAAAGCGCaaaaaaaGGCCCTGGAAGGCCGCGAAAAGCTGACATCGGCTCATCAAAAGAAGTGAAAGACAAAAAACCACCTGAAGAGTCGGAAGCTTATCGCAATAAAAGCTTAGCCATCGATAGAGAAATATCCAAGTACATGTCATTGCATTGTGAAATCTGCAATGGAGAAGTAACAAATTTTGCTGCTCTTAAAGGCCATATGCGTGTCGAGCataatgttaaagGTTATGCTAGATGTTGTAACAAAAAATTCCTTAAGCGCGTTTTACTTCTAGAGCACATACGTAAACACTTAAATCCGGATTGTTACAAGTGTGATGAATGTAATAGGGTTTTTGCCGATCGCCAATCTATGCGTAATCATTTTCTTATCAAACATCAGAAGGATGAAGATAAGACCTTTACGTGCCATCAGTGCCCTAAGAAATTTGTTAGAAAGTATTTACTGGAACAACATAAAATGTTTGCACATGGAGATCGTACCACCACTTGTAAAAGCTGCAATAAACGTTTTGATACTGCAGCCCAATTATCAACTCATACCAAAGAGCATTGCTACGGAGTAATGTGCGACATCTGTGCCAAAGTTATACGCGGCACTGCTGCCTTTCAGCGTCACCAGTTGGAACATCAAGGCATTTCTTTCCCCAAAGTGCAATGCGACGAATGCGGGTCTTGGCACAAAGACAAATACACGCTTAACAAACATAAGAAACGTCATGAGCAATCCAAAGAGTTGCACGTCTGCGATATTTGCCAAAAAGTATCGCCTAGTCGCCCTGCCATGTTGAGCCATAAACGTTTTGTGCACAATCCCTTGCGTTCCTTCGAATGCAATGTGTGCAAAAAGAATTTTAAAAAAGCCATATATTTAAAGGAACACATGGCCTCGCATACAGGCGAAGTCTTGTATCGTTGCCCTCATTGCCCGAAAACTTTTAATTCCAATGCCAATATGCATTCACATCGCaaaaaaaTGCATCCGCAAGAATTTGAAGAAACCCGTAAATTAAGGCGTGAAAACGCTCATTTACCAGAGCCACCTATGCCGTCAATATCCTCCCTGAGTAATGTCAGAAAATTGCCAACAGAGACAAAAACTTTACTTGTTATGGACAGTCAACAAAATAAAGTTACAGAAAATATTTTCGTAACATCAGCAACAGCCAATGTGTGA
Protein Sequence: MFTSRKLCHRKLRKHKYRLLATFIVLVIIFLAYQKFYSSHNLNGSICEPIDVVYTWVNGTDPFFINNIVQFDPNYDVTRFDDKNELRYSLRSLEKYAPWIRHVYIITNGQIPYWLDLSNERVTVVPHELLTPYPNWLPTFSSSAIETFIHRIPNLSQRFLYLNDDIFLGDYLYPEDLYTDSEGVRVYQAWLVPDCAEDCPWTYIGDGSCDKHCNIANCQYDGGDCSLENNNSNNNNEHLVNHSKEHKDLFELLKANTTTARIAAHSHTRKFPKRKKSPFNFSNLPRNSSFRDLLHYHRNLTYAQDFKQMVENYNKRQQEKIKPSVSAMKASKAPMNQSHGKRIKPRDIFSQSLIYTNMLLNRCYGFKARHVLAHVGFLLERTVIEAMHEKFAHEIFNTASHRFRSSNDIQFAFAYYSFLMEETRATSVREIFSEFDTDHSQTWSDREIRTLLARTFPLPLDVSTLHFFEEIINNCSRYYDSKEIDQAIYTTLVYERYVDSNLPRITRDFVEKCLPLAQALEDNFSSRFKYKFHINSKRSLNSNFMMLTSNITQVAEALDKIRKIPRKFNCINDNMEPGLDDNDLIRQLLEDFYLSFFPVRSQYELPLQYRNRFENWHDYQRWRRRKRAALVLGYGPLQDDPISTVICNTCWFKVSDFHEFYESVEEAQRQLSETFLVKIESQTKAKQRHHFLEDDLIPSSSLPSKREPDDEFNEINDEVPFDMLMGVASDDRHKTVAKAAAIALGAEEDSHDVLTTHDFSNNSMEDVEVPNYEDEKFDSHDDDTFDGEAFMKNILINDNAKDTKPVKEETITESIQPIGIRVTRSSSKLQHNAHLTQKVFSNKSAKKGPGRPRKADIGSSKEVKDKKPPEESEAYRNKSLAIDREISKYMSLHCEICNGEVTNFAALKGHMRVEHNVKGYARCCNKKFLKRVLLLEHIRKHLNPDCYKCDECNRVFADRQSMRNHFLIKHQKDEDKTFTCHQCPKKFVRKYLLEQHKMFAHGDRTTTCKSCNKRFDTAAQLSTHTKEHCYGVMCDICAKVIRGTAAFQRHQLEHQGISFPKVQCDECGSWHKDKYTLNKHKKRHEQSKELHVCDICQKVSPSRPAMLSHKRFVHNPLRSFECNVCKKNFKKAIYLKEHMASHTGEVLYRCPHCPKTFNSNANMHSHRKKMHPQEFEETRKLRRENAHLPEPPMPSISSLSNVRKLPTETKTLLVMDSQQNKVTENIFVTSATANV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00748530;
90% Identity: iTF_00750754;
80% Identity: -