Gpal001082.1
Basic Information
- Insect
- Glossina pallidipes
- Gene Symbol
- -
- Assembly
- GCA_000688715.1
- Location
- Scaffold201:40986-46204[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.03 2.3 8.9 0.3 2 23 240 262 239 262 0.91 2 14 0.0025 0.2 12.3 0.4 2 23 270 292 269 292 0.96 3 14 0.0011 0.083 13.5 4.1 3 23 313 334 311 334 0.97 4 14 0.00016 0.012 16.1 5.6 3 23 358 378 356 378 0.96 5 14 0.00061 0.047 14.2 0.6 1 23 384 406 384 406 0.96 6 14 9.2e-08 7.1e-06 26.3 3.4 1 23 412 434 412 434 0.98 7 14 0.00033 0.026 15.1 0.2 2 22 634 654 633 656 0.89 8 14 0.0028 0.22 12.1 0.4 2 23 664 686 663 686 0.96 9 14 1.2e-05 0.00092 19.6 5.1 1 23 705 728 705 728 0.97 10 14 7.4e-05 0.0057 17.1 0.6 1 23 753 775 753 775 0.96 11 14 1.2e-06 9.3e-05 22.7 2.7 1 23 781 803 781 803 0.98 12 14 4.7e-08 3.6e-06 27.2 3.1 1 23 809 831 809 831 0.96 13 14 7.7e-06 0.00059 20.2 3.8 1 23 837 859 837 859 0.98 14 14 0.0028 0.21 12.2 0.9 1 19 865 883 865 886 0.97
Sequence Information
- Coding Sequence
- ATGGAATCACCATTATCGTCTACACAAGCTAAAGAAATTGATCAAATATGCCGAACATGTGGAACATGTACACGAGTGAAACCCGGTCGCTATTCCTTACGTCACCCTATACCTTTGGATATAGGCCCGCCAAAAACATACGGGGAACTTTTAAGTAATTTATTAAAAATTAATCTTGCTATGGAAACAGAAAATATTATGCCTCAGCGGTTGTGTATCAAGTGTGCAAATTTATTAAAAAATGTTTATATGTTCATTTTGGAAGCGAGAAAATTACATGAAAAATATTCAAGTCAACAATGGTATTTAGAAAATGTTCTGAAGAATCAAGATTGTTTACAAGAAATACCAATTGATTTCCCAAAAGGATCACAAATAGTGGTAGACATCAAGACAGAGCCGCAGCCCTCTATGAATCTGCTAAATTCCGAATATGTAGAAACCGGAGTAAAACTTGAACAGTCGAATGCAAATGCCAAAAAAGGAGAGGAAACTAAAAATTCTGATGAACACGCACTAAACGACGTGGTCGTAAAATTTGAGCATAACGGGGAGGGGAAAAGCTCTCGAGTCGTCGGTGAAAATATCAAGAAAAATATTGTAAATAATTCCCAACAAAGTGATGATAATCAAGGATGCAACTTACCAATTGCTGATGGGGAATATACTAAAGAAACTAACGATAGCAAGGAATCCATTCAGCGACACTTAGCTGTACGTTGCGATTTGTGTGATAAAATTTATATAAATTATAAAGCTTTTGCTACCCACAAAACATATGCCCATATGACTGATGaaaaaaaaTTGCGTTGTGCTGTGTGTGATTTTAAAACAAGTCGAATATCTTCCTTAAAAGTTCATCTGACCACTATACATGGGCCCGAATGTGTGGAAAAGTATATTAAACCGAAAAACGACCGCGTAAGAAATTTTGGCTGCGATCTTTGTTCACGCAAGTATTGTCGTAAAGACGATCTACaaaaacacgttaagaaaaaacacgttaacggttcgagaatagaaaaacaaaaacttcgcggaaatgtggaaaaacGGAAAGATTTTCATTTGTGTAACTTTTGCGGGCAGTCGTTTACAACTCATAGCAGCCTGCAGATACACTCTAGGAAACATACCGGTGAACGACCCTTTAAATGTGATTTATGTGAAAAAGCATTTATGAGGCAGCAAGATATGAAATTGCATCGTGTCATACACAGCGATGAAAAGCCTCATCAGTGCTTCGAATGTGGCAAATCATTTAAAAGATCCGATAAACTTCGCGACCATATGCGAGTACATTCGGAACTTCGTCCTCACAAATGTACAGAGTATACACGATGTCGAACATGTATAAAAACGTCATCAAGCTATCAATCCTTAGAGCAAGTCATTAATAACGATACGGATCAAGCAAAAACTTACGGTGAATTAGTAAAAGATCTATTGCAAGTGGCAAGTGGAGTGGATCATGTTTCTGCTCTAGAAGATCAACTGCCTCAAAAAATTTGCAAAAAATGTGCTAACTTACTGAGGAATGTTTACTTATTTATAGTAGAAGCGCGAAGACGGCATGAAGAACTTTTACAATACCTTTGCGGTATTAAATCTGAGGATTGTTTACAAGAGGTGTCCATTGATTTGCCTAATCTAACGGAAATGCAAATAAAGTCAGAACCTGAAATAATTGAAACACCGGTATCTTCTTTAGAAGATAAAAGCGACCAAAATTGCATATCATTGAAACCTGAGCTAAACCATGACAGTGTTCACGAAACAAAGGAACATAGCCTAGTTGATTGCGGTCCGGAGAACTTGCATAGTGATGCCAGTGACATCTCGTCAGTTGCTGAAGACGATTTAATGGATTTTAATTTATCTCCAAAATCATTGGCAGTACGCTGTGATATCTGTGATAAAGTGTATAAAAATGCGATAGCTCTGACAGCTCATAAAACGTTTAGTCATATGCCCGAAGAAAAGAAAATTCCTTGCGCTTTGTGCAATTTTAAAACTAGTCGTACATCAGCGTTTAAAGTTCATTTAAGAACTATACACGGTCCAGAAACGGTCGACAAATACTTCAAGCCCCGTAGAGTCTGTAAAGGAAGTTTTTGCTGTACGATGTGTCCTAAACGATATAGTCGTAAAAATGATTTGCAGAGGCATATTAAAAAGACGCATATTAATGGCGAGAATTCAGTAAGGAAGGCAGCTAAATCTGGCCAGAAATCGAAACAGAAATATCGTCAGTCTTATCTTTGCACGTTTTGTGGCCAGTCATTTGCTGAGAAATATTACTTGAGTATTCATGCTCGTACTCATACTGGTGATAGTCCTTTTAAGTGCGAATTCTGCGAAAAGTCCTTTAAACGTTCGGATAGCTTAAGATATCATATGGTCACGCACAGCGATGAAAAGCCACACGCTTGTTCAGAATGTGGCAAATCATTTAAACGTAAAGACAAATTACGCACGCATATGCGCGTTCATTCAGAATTACGCCCATACAAGTGTAGCGAGTGCGAAAAGACTTTCAAGTACTCCTCCGTGCTAAAAACTCATATGCATATCCATACCGGTCAGACTCCATTCTCATGTAAAATATGTGGCGAAAACTTTTCATTGCGAACTTCTTTGAATATACATTGTGCGAAGAACGGGCACTTTGAAATTTAA
- Protein Sequence
- MESPLSSTQAKEIDQICRTCGTCTRVKPGRYSLRHPIPLDIGPPKTYGELLSNLLKINLAMETENIMPQRLCIKCANLLKNVYMFILEARKLHEKYSSQQWYLENVLKNQDCLQEIPIDFPKGSQIVVDIKTEPQPSMNLLNSEYVETGVKLEQSNANAKKGEETKNSDEHALNDVVVKFEHNGEGKSSRVVGENIKKNIVNNSQQSDDNQGCNLPIADGEYTKETNDSKESIQRHLAVRCDLCDKIYINYKAFATHKTYAHMTDEKKLRCAVCDFKTSRISSLKVHLTTIHGPECVEKYIKPKNDRVRNFGCDLCSRKYCRKDDLQKHVKKKHVNGSRIEKQKLRGNVEKRKDFHLCNFCGQSFTTHSSLQIHSRKHTGERPFKCDLCEKAFMRQQDMKLHRVIHSDEKPHQCFECGKSFKRSDKLRDHMRVHSELRPHKCTEYTRCRTCIKTSSSYQSLEQVINNDTDQAKTYGELVKDLLQVASGVDHVSALEDQLPQKICKKCANLLRNVYLFIVEARRRHEELLQYLCGIKSEDCLQEVSIDLPNLTEMQIKSEPEIIETPVSSLEDKSDQNCISLKPELNHDSVHETKEHSLVDCGPENLHSDASDISSVAEDDLMDFNLSPKSLAVRCDICDKVYKNAIALTAHKTFSHMPEEKKIPCALCNFKTSRTSAFKVHLRTIHGPETVDKYFKPRRVCKGSFCCTMCPKRYSRKNDLQRHIKKTHINGENSVRKAAKSGQKSKQKYRQSYLCTFCGQSFAEKYYLSIHARTHTGDSPFKCEFCEKSFKRSDSLRYHMVTHSDEKPHACSECGKSFKRKDKLRTHMRVHSELRPYKCSECEKTFKYSSVLKTHMHIHTGQTPFSCKICGENFSLRTSLNIHCAKNGHFEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00749123; iTF_00746877;
- 90% Identity
- -
- 80% Identity
- -