Gmor007523.1
Basic Information
- Insect
- Glossina morsitans
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000642321:26994-32303[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 0.61 10.1 0.5 2 23 240 262 239 262 0.92 2 13 0.001 0.057 13.4 0.3 2 23 270 292 269 292 0.96 3 13 0.00052 0.028 14.3 0.6 1 23 314 336 314 336 0.96 4 13 7.8e-08 4.3e-06 26.4 3.4 1 23 342 364 342 364 0.98 5 13 4.8e-05 0.0026 17.6 5.3 1 23 370 392 370 392 0.98 6 13 0.00028 0.015 15.2 0.2 2 22 576 596 575 598 0.89 7 13 0.0024 0.13 12.3 0.4 2 23 606 628 605 628 0.96 8 13 1e-05 0.00056 19.7 5.1 1 23 647 670 647 670 0.97 9 13 6.3e-05 0.0034 17.2 0.6 1 23 695 717 695 717 0.96 10 13 1e-06 5.6e-05 22.9 2.7 1 23 723 745 723 745 0.98 11 13 4e-08 2.2e-06 27.3 3.1 1 23 751 773 751 773 0.96 12 13 6.5e-06 0.00036 20.3 3.8 1 23 779 801 779 801 0.98 13 13 0.0024 0.13 12.3 0.9 1 19 807 825 807 828 0.97
Sequence Information
- Coding Sequence
- ATGGAATCATCATTAGCGTCTATACAAGCTAAAGAAATTGGTCAAATATGCCGAACATGTGGAACATGTGCACGAGTGAAACCCGGCCGCTATTCCTTACATCACCCTATACCTTTGGATATAGGCCCGCCAAAAACATACGGGGAACTTTTAAGTAATTTATTAAAAATTAATTTTGCTATGGAAACAGAAAATATTATGCCTCAACGGTTGTGTATCAAGTGTGCAAATTTATTAAAAAATGTTTACATGTTCATTTTGGAAGCGAGAAAATTACATGAAAAATACTCAAGTCAACAATGGTATTTAGAAAATGTTCTGAAGAATCAAGATTGTTTACAAGAAATACCAATTGATTTCCCAAAAGGATCACAAATAGTGGTAGACATTAAGACAGAGCCGCAGCCCTCTATGAATCTGTTAAATTCCGAATATGTAGAAACTGGAGTAAAACTTGAACAGTCGAATGCAAATGCCAAAAAAGGGGAGGAAGCTAAAAATTCGGATGAACACGCACTAAACGACGCGGTCGTAAAATTTGAGCATAACGGGGAGGAGAAAAGCTCCCGAGTCGTAGGTGAAAATGTCAAGAAAAATATTGTGAATAATTCGCAACAAAGTGATGATAATCAAGGATGCAACTTAGCAATTGCTGATGGGGAATATACTAAAGAAACTAACGACAACACGGAATCGATTCAGCGACACTTAGCTGTACGTTGCGATTTGTGTGATAAAATTTATATAAATTATAAAGCTTTTACTACCCACAAAACATATGCCCATATGACTGATGaaaaaaaaTTGCGTTGTGCTGTATGTGGTTTTAAAACAAGTCGAATATCTTCCTTAAAAGTTCACCTGACCACTATACACGGGCCCGAATGCGTGGAAAACAGTTTGCAGATACACTCTAGGAAACATACCGGTGAACGACCTTTTAAATGTGATTTATGTGAAAAGGCATTTATGAGGCAGCAAGATATGAAATTGCATCGTGTCATACACAGTGATGAAAAGCCTCATCAGTGCTTTGAATGTGGCAAATCATTTAAAAGATCCGACAAACTTCGCGACCATATGCGAGTACATTCGGAACTTCGTCCTCACAAATGTACAGAGTGTCAGAAAACATTTAAATATGCATCTGTACTCAGGACCCACATGCATATACATACTGGACAAAGGCCATTTTCATGTAAAACTTGCGAGCAAGTCATTAATAACGATACGGATCAAGCAAAAACTTACGGTGAATTAGTAAAAGATCTATTGCAAGTGGCAAGTGGAGTGGATCATGTTTCTGCTCTAGAAGATCAACTGCCTCAAAAAATTTGCAAAAAATGTGCTAACTTACTGAGGAATGTTTACTTATTTATAGTAGAAGCACGAAGACGGCATGAAGAACTTTTACAATACCTTTGCGGTATTAAATCTGAGGATTGTTTACAAGAGGTGTCCATTGATTTGCCTAATCTAACGGAAATGCAAATAAAGTCAGAACCTGAAATAATTGAAACACCGGTATCTTCTTTAGAAGATAAAAGCGACCAAAATTGCATATCATTGAAACCTGAGCTAAACCATGACAGTGTTCACGAAACAAAGGAACATAGCCTAGTTGATGGCGGCCCGGAGAACTTGCATAGTGATGCCAGTGACATCTCGTCAGTTGCTGAAGACGATTTAATGGATTTCAATTTATCTCCAAAATCATTGGCAGTACGCTGTGATATCTGTGATAAAGTGTATAAAAATGCGATAGCTCTGACAGCTCATAAAACGTTTAGTCATATGCCCGAAGAAAAGAAAATTCCTTGCGCTTTGTGCAATTTTAAAACTAGTCGTACATCAGCGTTTAAAGTTCATTTAAGGACTATACATGGTCCAGAAACGGTCGACAAATACTTCAAGCCCCGTAGAGTCTGTAAAGGAAGTTTTTGCTGTACGATGTGTCCTAAACGATATAGTCGTAAAAATGATTTGCAGCGGCACATTAAAAAGACGCATATTAATGGCGAGAATTCAGTAAGGAAAGCGGCTAAATCTGGCCAGAAATCGAAACAGAAATACCGTCAGTCTTATCTTTGCACGTTTTGTGGCCAGTCATTTGCTGAGAAATATTACTTGAGTATTCATGCTCGTACTCATACTGGTGATAGTCCATTTAAGTGCGAATTCTGCGAAAAGTCCTTTAAACGATCGGATAGCTTAAGATATCATATGGTCACACACAGCGATGAAAAGCCACACGCTTGTTCAGAATGTGGCAAGTCATTCAAACGCAAAGACAAATTACGCACGCATATGCGCGTCCATTCAGAATTACGCCCATACAAGTGTAGCGAATGCGAAAAGACTTTCAAGTACTCCTCCGTGCTAAAAACTCATATGCATATCCATACCGGTCAGACTCCATTCTCATGTAAAATATGTGGCGAAAATTTTTCATTGCGAACTTCTTTGAATATACATTGTGCGAAGAACGGGCACTTTGAAATTTAA
- Protein Sequence
- MESSLASIQAKEIGQICRTCGTCARVKPGRYSLHHPIPLDIGPPKTYGELLSNLLKINFAMETENIMPQRLCIKCANLLKNVYMFILEARKLHEKYSSQQWYLENVLKNQDCLQEIPIDFPKGSQIVVDIKTEPQPSMNLLNSEYVETGVKLEQSNANAKKGEEAKNSDEHALNDAVVKFEHNGEEKSSRVVGENVKKNIVNNSQQSDDNQGCNLAIADGEYTKETNDNTESIQRHLAVRCDLCDKIYINYKAFTTHKTYAHMTDEKKLRCAVCGFKTSRISSLKVHLTTIHGPECVENSLQIHSRKHTGERPFKCDLCEKAFMRQQDMKLHRVIHSDEKPHQCFECGKSFKRSDKLRDHMRVHSELRPHKCTECQKTFKYASVLRTHMHIHTGQRPFSCKTCEQVINNDTDQAKTYGELVKDLLQVASGVDHVSALEDQLPQKICKKCANLLRNVYLFIVEARRRHEELLQYLCGIKSEDCLQEVSIDLPNLTEMQIKSEPEIIETPVSSLEDKSDQNCISLKPELNHDSVHETKEHSLVDGGPENLHSDASDISSVAEDDLMDFNLSPKSLAVRCDICDKVYKNAIALTAHKTFSHMPEEKKIPCALCNFKTSRTSAFKVHLRTIHGPETVDKYFKPRRVCKGSFCCTMCPKRYSRKNDLQRHIKKTHINGENSVRKAAKSGQKSKQKYRQSYLCTFCGQSFAEKYYLSIHARTHTGDSPFKCEFCEKSFKRSDSLRYHMVTHSDEKPHACSECGKSFKRKDKLRTHMRVHSELRPYKCSECEKTFKYSSVLKTHMHIHTGQTPFSCKICGENFSLRTSLNIHCAKNGHFEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00749861;
- 90% Identity
- -
- 80% Identity
- -