Gaus018491.1
Basic Information
- Insect
- Glossina austeni
- Gene Symbol
- -
- Assembly
- GCA_000688735.1
- Location
- Scaffold630:68367-73480[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0011 0.081 13.5 4.1 3 23 222 243 220 243 0.97 2 14 0.00016 0.012 16.1 5.6 3 23 267 287 265 287 0.96 3 14 0.0006 0.045 14.3 0.6 1 23 293 315 293 315 0.96 4 14 9.1e-08 6.8e-06 26.4 3.4 1 23 321 343 321 343 0.98 5 14 5.5e-05 0.0042 17.6 5.3 1 23 349 371 349 371 0.98 6 14 0.034 2.6 8.8 0.8 1 19 377 395 377 395 0.90 7 14 0.00033 0.025 15.2 0.2 2 22 588 608 587 610 0.89 8 14 0.0028 0.21 12.2 0.4 2 23 618 640 617 640 0.96 9 14 1.2e-05 0.00089 19.7 5.1 1 23 659 682 659 682 0.97 10 14 7.2e-05 0.0055 17.2 0.6 1 23 707 729 707 729 0.96 11 14 1.2e-06 9e-05 22.8 2.7 1 23 735 757 735 757 0.98 12 14 4.6e-08 3.5e-06 27.3 3.1 1 23 763 785 763 785 0.96 13 14 7.5e-06 0.00057 20.3 3.8 1 23 791 813 791 813 0.98 14 14 0.0027 0.21 12.3 0.9 1 19 819 837 819 840 0.97
Sequence Information
- Coding Sequence
- ATGGAATCACCATTATCGTCTATACAAGCTAAAGAAATTGATCGTATATGCCGAACATGTGGAACATGTGCACGAGTGAAACCCGGTCGTTATTCCTTACATCACCCTATACCTTTGGATATAGGTCCGCCAAAAACATACGGGGAACTTTTAAGTAATTTATTAAAAATTAATTTTGCTATGGAAACAGAAAATATTATGCCTCAACGGTTGTGTATCAAGTGTGCAAATTTATTAAAAAATGTTTATATGTTCATTTTGGAAGCGAGAAAATTACACGAAAAATATTCAAGTCAACAATGGTATTTAGAAAATGTTCTGAAGAATCAAGATTGTTTACAAGAAATACCAATTGATTTCCCAAAAGGATCGCAAATAGTAGCAGACATCAAGACAGAGCCGCAGCCCTCTATAAATCTGCTAAATTGCGAATATGTAGAAACCGGAGTAAAACTTGAACAGTCGAATGTAAATGCCAAAAAAGGAGAGGAAACTAAAAACACTGATGAACACGCACTAAACGACATGGTCGTAAAATTTGAGCATAACGGGGAGGGGAAAAGTCGAATATCTTCCTTAAAAGTTCACCTGTCCACTATACACGGGCCCGAATGTGTGGAAAAGTATATTAAACCGAAAAACGACCGCGTAAGAAATTTTGGATGCGATCTTTGTTCACGCAAGTATTGTCGTAAAGATGATCTacaaaaacacgttaagaaaaaacacgttaacggttcaagaatagaaaaacaaaaacTTCGAGGAATTGTGGAAAAACGGAAAGATTTTCATTTGTGTAACTTTTGCGGGCAGTCGTTTACAACACATAGCAGCCTACAGATACACTCTAGGAAGCATACCGGTGAACGACCCTTTAAATGTGATTTATGTGAAAAGGCATTTATGAGGCAGCAAGATATGAAATTGCATCGTGTCATACACAGTGATGAAAAGCCTCATCAGTGCTTCGAATGTGGCAAATCATTTAAAAGATCCGATAAACTTCGCGACCATATGCGAGTACATTCAGAGCTTCGTCCTCACAAATGTACAGAGTGCCAGAAAACATTTAAATATGCATCTGTACTCAGGACCCACATGCATATACATACTGGACAAAGACCATTTTCATGTAAAACTTGCGGCGAAAGATTCTCGCTGAGGACTTCACTTTATGGACATTGTTTCAAAAATACACGATGTCGAACATGTATAAAAACGTCATCGAGCTATCAATCCTTAGAGCAAGTCATTAATAACGATGCGGATCAAGCAAAAACTTACGGTGAATTAGTAAAAGATCTATTGCAAGTGGCAAGTGGAGTGGATCATGTTTCTGCTCTAGAAGATCAACTGCCTCAAAAAATTTGCAAAAAATGTGCTAACTTACTGAGGAATGTTTACTTATTTATAGTAGAAGCACGAAGGCGGCATGAAGAACTTTTACAATACCTTTGCGGTATTAAATCTGAGGATTGTTTACAAGAGGTGTCCATCGATTTGCCTAATCTAACGGAAATGCAAATAAAGTCAGAACCTGAAATAATTGAAACACCGGTATCTTCTTTAGAAGATAAAAGCGACCAAAATTGCATATCATTGAAACCTGAGCTAAACCATGACAGTGTTCACGAAACAAAGGAACATAGCCTAGTTGATGGCGGTCCGGAGAACTTGCATAGTGATGCCAGTGACATCTCGTCAGTTGCTGAAGACGATTTAATGGATTTTAATTTATCTCCAAAATCATTGGCAGTACGCTGTGATATCTGTGATAAAGTGTATAAAAATGCGATAGCTCTGACAGCTCATAAAACGTTTAGTCATATGCCCGAAGAAAAGAAAATTCCTTGCGCTTTGTGTAATTTTAAAACTAGTCGTACATCAGCGTTTAAAGTTCATTTAAGAACTATACACGGTCCAGAAACGGTCGACAAATACTTCAAGCCCCGCAGAGTCTGTAAAGGAAGTTTTTGCTGTACGATGTGTCCTAAACGATATAGTCGTAAAAATGATTTGCAGAGGCATATTAAAAAGACACATATTAATGGCGAGAATTCAGTAAGGAAAACGGCTAAATCTGGCCAGAAATCGAAACAGAAATACCGTCAGTCTTATCTTTGCACGTTTTGTGGCCAATCATTTGCTGAGAAATATTACTTGAGTATTCATGCTCGTACTCATACTGGTGATAGTCCATTTAAGTGCGAATTCTGCGAAAAGTCCTTTAAACGTTCGGATAGCTTAAGATATCATATGGTCACACACAGCGATGAAAAACCACACGCTTGTTCAGAATGCGGCAAATCATTTAAACGCAAAGACAAATTACGCACGCATATGCGCGTTCATTCAGAATTACGCCCATACAAGTGTAGCGAATGCGAAAAGACTTTCAAGTACTCCTCCGTGCTAAAAACTCATATGCATATCCATACCGGTCAGACTCCATTCTCATGTAAAATATGTGGCGAAAATTTTTCATTACGAACTTCTTTGAATATACATTGTGCGAAGAATGGGCACTTTGAAATTTAA
- Protein Sequence
- MESPLSSIQAKEIDRICRTCGTCARVKPGRYSLHHPIPLDIGPPKTYGELLSNLLKINFAMETENIMPQRLCIKCANLLKNVYMFILEARKLHEKYSSQQWYLENVLKNQDCLQEIPIDFPKGSQIVADIKTEPQPSINLLNCEYVETGVKLEQSNVNAKKGEETKNTDEHALNDMVVKFEHNGEGKSRISSLKVHLSTIHGPECVEKYIKPKNDRVRNFGCDLCSRKYCRKDDLQKHVKKKHVNGSRIEKQKLRGIVEKRKDFHLCNFCGQSFTTHSSLQIHSRKHTGERPFKCDLCEKAFMRQQDMKLHRVIHSDEKPHQCFECGKSFKRSDKLRDHMRVHSELRPHKCTECQKTFKYASVLRTHMHIHTGQRPFSCKTCGERFSLRTSLYGHCFKNTRCRTCIKTSSSYQSLEQVINNDADQAKTYGELVKDLLQVASGVDHVSALEDQLPQKICKKCANLLRNVYLFIVEARRRHEELLQYLCGIKSEDCLQEVSIDLPNLTEMQIKSEPEIIETPVSSLEDKSDQNCISLKPELNHDSVHETKEHSLVDGGPENLHSDASDISSVAEDDLMDFNLSPKSLAVRCDICDKVYKNAIALTAHKTFSHMPEEKKIPCALCNFKTSRTSAFKVHLRTIHGPETVDKYFKPRRVCKGSFCCTMCPKRYSRKNDLQRHIKKTHINGENSVRKTAKSGQKSKQKYRQSYLCTFCGQSFAEKYYLSIHARTHTGDSPFKCEFCEKSFKRSDSLRYHMVTHSDEKPHACSECGKSFKRKDKLRTHMRVHSELRPYKCSECEKTFKYSSVLKTHMHIHTGQTPFSCKICGENFSLRTSLNIHCAKNGHFEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00749861;
- 90% Identity
- -
- 80% Identity
- -