Gbre009258.1
Basic Information
- Insect
- Glossina brevipalpis
- Gene Symbol
- -
- Assembly
- GCA_000671755.1
- Location
- Scaffold258:74496-78867[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-11 3.9e-08 32.6 0.0 1 38 404 442 404 447 0.89 2 4 6.5e-14 1.2e-10 40.6 0.1 2 39 459 496 458 499 0.94 3 4 5.3e-17 9.6e-14 50.5 0.0 1 45 513 558 513 558 0.97 4 4 7.4e-20 1.3e-16 59.7 0.0 1 45 565 610 565 610 0.97
Sequence Information
- Coding Sequence
- ATGACGATGAGTAATAAGGTGAATGGGAAGAAAGATGGAGTATGGATGTATGGAAGAGTGGGTGCTAAATTTAATGAAGAGGTTGATATTCAACTCTTAGATCTTATATCGTTTGAGTTTGAGAGGCTAAAAGGTCTCCTGCGTACCGCCGAACAATTAAAAATCAAAGGTCTTTGTGAGACCGCTGAGAACTCGGATGATTTGAACGACGCTGCCACTGCTACTATCACTGTCTCAGAGAATATACAACAGGCCGTGGTTGGTAATATTGTTAACGCCACTGTCGTACAAGGTCAACCCTCACCGCCTATACCCCACcaacatcaacaacagcaacagcagcaacaacagcagcagTTAGCCAATGCTGCCGTGCTTGCACACGCTGTAAGTCCCGCCAGTGCACAACAATTTGTTACCAGTGGTCAGTTAGTTACTTCAACGCCAGTTGTAACACAGCAACAACAGCAACTAAGTCGTAAATCTCGTGTACGTAAACGTTCAAAATCGCCTGATTTGCAACAGCTACAGCAACAACACCATCAGCAATCTCAACATCCGCAAGCAATTCTTATACAGAATCAGAATCAAACCGCTATCGTTAGTTTGCAACAGACATCGGCTGGAAATTATATCCCGGTATCAGGTGTTCAAACAGTACAGACAACTTCGGGTGGCGGGCAACCGCAACCTGGTACTACTATAGTAACGGCAGACGATTCGGATTCGGATAAACCGACTCTGCAGAAAATCTGTAAAACCGAAGAGGCTTCAGCTTCACCGGCTTCGACGTCGTCGGCTTCGGCATCGAATAATGCAGCTGGCGTAACTGCAGTGGCCAGTTCAGGACCGGCGATTGTCACACAAATTGTAGTAGCACGCGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGCGGCATTTTAGGAGTACCGATGGGTTTTTTGGACTTCGCTCCTGAACCCCCAGCACCTTCAGCAACTCCTGTCACCGTTACTGAACATGTAGATTTGTCCTGTAATCCTAGCACAGACACCAGAGATCTATCGAACATGTACAATTCCGACACGAGCGATGATTCAATGATGATTGCTAATGGTTCACCCCACGATCAAAACGAACCCCATTATACGAATTTAGATCAACAACAGCATGGTGGCGAACTCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCTCTAAAGAATCAAAATATGAGTCTGACGAAGGCGTCCGTTACATATGGCATCCCATCAACTACACTGTGGCAGCGTGCTCATCGTATGGGCATTGAAACACCTAAAAAGGAGGGTGGTACAAAATCGTGGAATGAAGATTCATTGAATAATGCCTTGGACGCGTTACGTTCTGGACAAATATCGGCTAATAAAGCATCTAAGGCCTACGGTATACCTTCCTCGACTTTATATAAAATCGCTCGACGTGAGGGCATACGCTTAGCGGCACCATTCAATGCAGCACCCACCACTTGGACACAAGATGATTTGGATCGCGCCCTGGCGGCTATACGAGCCGGTCATACATCGGTACAGAAGGCAAGTGCTGAGTTTGGTATACCAACAGGCACATTATACGGCCGCTGTAAACGTGAAGGCATAGAATTGTCAAGATCGAATCCTACGCCTTGGTCTGAGGATGCTATGAACGAAGCCTTAAATTCAGTACGCGTGGGTCAAATGTCCATTAATCAAGCCGCTATAAATTATAATTTACCCTATAGTTCTTTGTATGGTCGATTTAAGCGAGGTAAATACGATGTATCCAATACCAGTGGCACATCACTGAATAACACCTCGGGCAATACATCAGCCAGCATTGAAATTATTGAACATAGTCAAGAGAATTCGGTAAGTTATTAA
- Protein Sequence
- MTMSNKVNGKKDGVWMYGRVGAKFNEEVDIQLLDLISFEFERLKGLLRTAEQLKIKGLCETAENSDDLNDAATATITVSENIQQAVVGNIVNATVVQGQPSPPIPHQHQQQQQQQQQQQLANAAVLAHAVSPASAQQFVTSGQLVTSTPVVTQQQQQLSRKSRVRKRSKSPDLQQLQQQHHQQSQHPQAILIQNQNQTAIVSLQQTSAGNYIPVSGVQTVQTTSGGGQPQPGTTIVTADDSDSDKPTLQKICKTEEASASPASTSSASASNNAAGVTAVASSGPAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQQHGGELKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALDALRSGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLDRALAAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAINYNLPYSSLYGRFKRGKYDVSNTSGTSLNNTSGNTSASIEIIEHSQENSVSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00748140;
- 90% Identity
- iTF_00746629;
- 80% Identity
- -